RNA id: TU1691891


Basic Information

Item Value
RNA id TU1691891
length 2170
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1479442
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68095329 ~ 68098028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaccttttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcatgagatagtcacctggaatgctttcccaacagtcttgaaggagttcccacatatgctgaacacttgctGGCTGATTTTCCTTTACTCTacagtccaattcatcccaaaccatatcaattaggttgaggttgggtgtttgtggaggccaggtcatctgatgcagcactcatcactctccttcttgatcaaatagcccttacacagcctgaaggtgtgttttgggtcattgtcctgttgaaacacaaatagtcccattaagcgcaaagcagatgggatgatgtatcgctgcagaatgctgtggtagctatgctggttaagtgtgccttgaattttgaATAAGtcatagacagtgtcaccaacaccaacaaagcagccccacaccatcacacctcctccttcatgcttcacggtgggaactacacatgcagagatcatccgctcACCTGTCTCacgaagacacggcggttggaacaaaaaatatctaattttgactcattagaccaaaggacagatttccaccggtctaatgtccattgctcatgtttcttggccaaagcaagtcacttcttcttattggtgtcctttagtagtgttgtctttgcagcaattcgaccatgaaggccagatttacGCAGTCTccgctgaacagttgatgttgagatgtgtctgttactttaactctgtgaaccatttatttgggctgcaatctgaggtgcagttaattgccgatttctgattctggtaactctaatgaacttatcctctgccacagaggtaactctgggttttcctttcctgtggaagTCCTCATGAGAGCGAGTTTCagcatagcgcttgatgatttttgctactgcatttgaagaaactttcagttcttgacattttccgcattgactgatcagtaatgatggactgtcgtttctctttgcttatttgagctgttcttaccataatatggacttgatctttttcTTTCATacaccaaccctaccttgtcacaactcaactgattggctcaaacgcattaagaaggaaagaaattccacaaattatcttttaaaaaggcacacctgttaatttaaatgcattccaatgtcaagagtgtgcaaagatgtcatcaaggcgaagggtggcttctttaaagaatctcaaatataaaatatattttgatttgtttaacacttttttggttactacatgattccatattgtgttatttcatagctttgatgtcttcactattattctacaatgtagcgaatagtaaaaaaaaataagaaaaatccttgagtgagtaggttgtccaaacttttgactagaaCTGTATAGTGCATTATATTGTACAGATGTCGTattttaatttgagccagtttgctacagcaggaaaataatttaatataattatgtggattataattaatggatttGTTTGAGagaggttgatacatttttcattagggaaaatcaagtctgacattttaaagtgtaaGTTACAAACTTCTGCTTTTTAAACCTGGAATACATAAGTTTCTTATCAACAAAAGAGTgaccaaattaagatcctacatctgtacacctTTTACAGTTttctttttacctttatttaactaggcaagtcagttaaagtacaatttcttattttcaaggacagcctaggaacagtgggtaacctgccctgttcaggggcagaacgacagatttttaccttcggTTACTAGTcggacactctaaccactaggctaccctgccgccctacaCTGTATTGTGGCACAGTATTTCCTGTCTTTCCTGCACTATGCACATTGTTACTGTACTCTTATATTTGTCAGCTTGTCCTATCCTAACATTGCATTTGTAACAAAACAACATAATGTAAATATGGTATGCTGGCATCAATCAACACACTTCAATTGTAACACTGTCATTTGCATGTGGATGTTCATGTTTTTTTGCCCTATGAATCTCAAAGATGTCAAATGCACATTTCTACTGCAGTAAAAGATGGATTTATTTTAGTTTGTTATCAAATTATATCCTGATCATTTTTGACCCACGAAAAATCCATAAAATGTGTTCATACCAAACAAAAATAAACTCAGATTTTTAAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1691906 lncRNA upstream 5407 68089615 ~ 68089922 (+) True G1479455
TU1691900 lncRNA upstream 22367 68072570 ~ 68072962 (+) True G1479449
TU1691805 lncRNA upstream 162784 67932340 ~ 67932545 (+) True G1479357
TU1691798 lncRNA upstream 173932 67921146 ~ 67921397 (+) True G1479350
TU1691795 lncRNA upstream 175325 67919759 ~ 67920004 (+) True G1479347
TU1691911 lncRNA downstream 8437 68105935 ~ 68106186 (+) True G1479460
TU1692071 lncRNA downstream 15913 68113411 ~ 68113705 (+) True G1479615
TU1692073 lncRNA downstream 17570 68115068 ~ 68115292 (+) True G1479617
TU1692115 lncRNA downstream 84310 68181808 ~ 68182080 (+) True G1479657
TU1692117 lncRNA downstream 88680 68186178 ~ 68187003 (+) True G1479659
XM_036948354.1 mRNA upstream 466 68090205 ~ 68094863 (+) True LOC110493241
XM_021569481.2 mRNA upstream 310472 67775374 ~ 67784857 (+) True dhrs3b
XM_021569479.2 mRNA upstream 342574 67747821 ~ 67752755 (+) False klhdc7a
XM_036950494.1 mRNA upstream 351573 67468416 ~ 67743756 (+) False LOC110494440
XM_021570506.2 mRNA downstream 52532 68150030 ~ 68151429 (+) True si:ch211-220m17.5
XM_021569493.2 mRNA downstream 179424 68276922 ~ 68320684 (+) False LOC110494448
XM_021569495.2 mRNA downstream 179425 68276923 ~ 68320684 (+) False LOC110494448
XM_021569496.2 mRNA downstream 197545 68295043 ~ 68318888 (+) False LOC110494448
XR_005037056.1 mRNA downstream 197545 68295043 ~ 68319036 (+) False LOC110494448
TU1690884 other upstream 431680 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1227449 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1260389 66833572 ~ 66834940 (+) False iffo2b
TU1689890 other upstream 1314537 66679260 ~ 66780792 (+) True kcnab2a
TU1692079 other downstream 25040 68122538 ~ 68125780 (+) True G1479621
TU1692851 other downstream 836828 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 897134 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2553445 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2742122 70839620 ~ 70841230 (+) True LOC110494494

Expression Profile