RNA id: TU1692073



Basic Information


Item Value
RNA id TU1692073
length 225
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1479617
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68115068 ~ 68115292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACGCAACCAATGAATGGTCGACAATATGGATGGCCCCAACAGCCTCCTGTGACAAACCAGGCATGGTTCCCACTGCAGAATAATCAACAATAGGGATGCCCTGACCCCCTTCTCTAGTGTCACCAGTACATATTTCCGGGTGGTACCAACGAAGCAATCATTACTCTGAAGGTCAACAATCAAGAGGTACCATTTTTAATAGACACTGGAGCTCACACCTCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1692071 lncRNA upstream 1363 68113411 ~ 68113705 (+) True G1479615
TU1691911 lncRNA upstream 8882 68105935 ~ 68106186 (+) True G1479460
TU1691892 lncRNA upstream 17040 68096633 ~ 68098028 (+) False G1479442
TU1691891 lncRNA upstream 17570 68095329 ~ 68097498 (+) False G1479442
TU1691893 lncRNA upstream 17570 68096633 ~ 68097498 (+) True G1479442
TU1692115 lncRNA downstream 66516 68181808 ~ 68182080 (+) True G1479657
TU1692117 lncRNA downstream 70886 68186178 ~ 68187003 (+) True G1479659
TU1692120 lncRNA downstream 82846 68198138 ~ 68198730 (+) True G1479662
TU1692124 lncRNA downstream 105105 68220397 ~ 68220725 (+) True G1479666
TU1692125 lncRNA downstream 105716 68221008 ~ 68221318 (+) True G1479667
XM_036948354.1 mRNA upstream 20205 68090205 ~ 68094863 (+) True LOC110493241
XM_021569481.2 mRNA upstream 330211 67775374 ~ 67784857 (+) True dhrs3b
XM_021569479.2 mRNA upstream 362313 67747821 ~ 67752755 (+) False klhdc7a
XM_036950495.1 mRNA upstream 371312 67468417 ~ 67743756 (+) True LOC110494440
XM_021570506.2 mRNA downstream 34738 68150030 ~ 68151429 (+) True si:ch211-220m17.5
XM_021569493.2 mRNA downstream 161630 68276922 ~ 68320684 (+) False LOC110494448
XM_021569495.2 mRNA downstream 161631 68276923 ~ 68320684 (+) False LOC110494448
XM_021569496.2 mRNA downstream 179751 68295043 ~ 68318888 (+) False LOC110494448
XR_005037056.1 mRNA downstream 179751 68295043 ~ 68319036 (+) False LOC110494448
TU1690884 other upstream 451419 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1247188 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1280128 66833572 ~ 66834940 (+) False iffo2b
TU1689890 other upstream 1334276 66679260 ~ 66780792 (+) True kcnab2a
TU1692079 other downstream 7246 68122538 ~ 68125780 (+) True G1479621
TU1692851 other downstream 819034 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 879340 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2535651 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2724328 70839620 ~ 70841230 (+) True LOC110494494

Expression Profile