RNA id: TU1692305



Basic Information


Item Value
RNA id TU1692305
length 1015
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G1479757
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68469790 ~ 68470847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccaggggcacacttcaacattcagacataatttacaaacgaatcATGTATGTTTAGTAAGTCTGTAgttctttaaagtattttttacttaatatACACAGTTATGTAATGTACTTATGTAGGCAGTGGAAGTGAGAAAATTATGTGCACTGACCAGACAGCAGAAATAAAACGTAACCTAATTTATAGCCTATTAACATTTGTTTTTATCAAACTACACTATCTGTGAATAGTTGCTTAGCAGAACATAATGGTCTTCAGTATTAAGGTCATTATGGCGGTCCAAATGTTACAATCTATGTGTACTATTATGTCAGTAATGAAATGAAATAATGACAAACCCCAAATAAATAAAGCCCCAATAAAAGCTACAGCACGTTGCCCTTAAAATATCACAAAATTGGTTTAGAGTAGAGTTAAATATTTCCTATAAAACAAAGCAATTAATCAATTTAGTTCAGTAACCAATTTTGAAGATCTGTATTAACATTTTTCATCTTAAAAGTATTTTACGCTGTCTAACAGCCGACCGAGTACATGTCAAACGACGCTGGAATGTCAAATTCTTTCATAACAGTTTGTTCATTCTTGTTTCCTATTCCATCCTTTCTCCACGTCTTGAAATGGTTCACATTCAAATGGTCAACATATTTCTCAGTGTTCAGAAGGCACCCATTGGCTACTGTTTCTCAGAGTAAGAACCAGGAAGTGGCCAGGTCCAGGTCTTGGCACTGGAACTGGAACTGCTACAGCAGATCAGTTCAGGCTACAATGATTCCGTAGCCAGGGATGTGTGTATCATTGATTGTAAAGAGCTCATGCTTGTGTATGACCACAATGGTATTGTGTAATTTAAAGTTCAATGTTTCTGGGAAGGCACAGAGATGCATAGGCGATCACTCAGTAGGTTTGCACACTTTGCACAGATTGCCAGCTGTGGATGGTAGGAGTTGGCAGAGTCTCCAGTATCCAACAGTTAGTGGTTTAGCAAGTTCACATTAAGGCTTAATCTTCC

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU1692268 lncRNA upstream 43839 68425483 ~ 68425951 (+) True G1479725
TU1692263 lncRNA upstream 61245 68408286 ~ 68408545 (+) True G1479722
TU1692150 lncRNA upstream 204412 68263965 ~ 68265378 (+) False G1479684
TU1692151 lncRNA upstream 204412 68264575 ~ 68265378 (+) True G1479684
TU1692143 lncRNA upstream 209803 68258926 ~ 68259987 (+) True G1479679
TU1692317 lncRNA downstream 8764 68479611 ~ 68479914 (+) True G1479766
TU1692329 lncRNA downstream 24985 68495832 ~ 68496046 (+) True G1479778
TU1692683 lncRNA downstream 126288 68597135 ~ 68597359 (+) True G1480102
TU1692684 lncRNA downstream 127131 68597978 ~ 68598288 (+) True G1480103
TU1692702 lncRNA downstream 160961 68631808 ~ 68660462 (+) True G1480120
LOC110493242 mRNA upstream 49866 68418717 ~ 68419924 (+) True LOC110493242
XR_002469276.2 mRNA upstream 51508 68415994 ~ 68418282 (+) True LOC110494454
XM_021569520.2 mRNA upstream 55584 68408937 ~ 68414206 (+) False LOC110494453
XM_021569534.2 mRNA downstream 13939 68484786 ~ 68487734 (+) True LOC110494460
XR_005037057.1 mRNA downstream 56014 68526861 ~ 68568254 (+) False LOC110494461
XM_036950522.1 mRNA downstream 56014 68526861 ~ 68593618 (+) True LOC110494461
XM_021569536.2 mRNA downstream 131083 68601930 ~ 68625052 (+) False LOC101268937
XM_021569537.2 mRNA downstream 131083 68601930 ~ 68625052 (+) False LOC101268937
TU1692079 other upstream 344010 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 806141 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1601910 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1634850 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1751102 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 463479 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 523785 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2180096 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2368773 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2707666 71178513 ~ 71180429 (+) True G1483346

Expression Profile


TU1692305 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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TU1692305 Expression in each Bioproject

Bar chart with 14 bars.
TU1692305 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.