RNA id: TU1692683


Basic Information

Item Value
RNA id TU1692683
length 225
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1480102
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68597135 ~ 68597359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATGCTCACGTAACCTTTATTGTAACATTCTGAACAGAAGGTTCTCTTCGCACTAGCAATAAAGCAAAAGGAAGAATGCAACAGCGTACTGGTAGTTGACATGAGTTGCACTGGATacatgtctgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692329 lncRNA upstream 101089 68495832 ~ 68496046 (+) True G1479778
TU1692317 lncRNA upstream 117221 68479611 ~ 68479914 (+) True G1479766
TU1692305 lncRNA upstream 126288 68469790 ~ 68470847 (+) True G1479757
TU1692268 lncRNA upstream 171184 68425483 ~ 68425951 (+) True G1479725
TU1692263 lncRNA upstream 188590 68408286 ~ 68408545 (+) True G1479722
TU1692684 lncRNA downstream 619 68597978 ~ 68598288 (+) True G1480103
TU1692702 lncRNA downstream 34449 68631808 ~ 68660462 (+) True G1480120
TU1692703 lncRNA downstream 43936 68641295 ~ 68648016 (+) True G1480121
TU1692705 lncRNA downstream 64809 68662168 ~ 68664035 (+) True G1480123
TU1692708 lncRNA downstream 109350 68706709 ~ 68708059 (+) True G1480126
XM_036950522.1 mRNA upstream 3517 68526861 ~ 68593618 (+) True LOC110494461
XR_005037057.1 mRNA upstream 28881 68526861 ~ 68568254 (+) False LOC110494461
XM_021569534.2 mRNA upstream 109401 68484786 ~ 68487734 (+) True LOC110494460
LOC110493242 mRNA upstream 177211 68418717 ~ 68419924 (+) True LOC110493242
XR_002469276.2 mRNA upstream 178853 68415994 ~ 68418282 (+) True LOC110494454
XM_021569536.2 mRNA downstream 4571 68601930 ~ 68625052 (+) False LOC101268937
XM_021569537.2 mRNA downstream 4571 68601930 ~ 68625052 (+) False LOC101268937
XM_036950523.1 mRNA downstream 4571 68601930 ~ 68625052 (+) True LOC101268937
XR_002469280.2 mRNA downstream 71773 68669132 ~ 68671682 (+) True LOC110494465
XM_021569563.2 mRNA downstream 330605 68927964 ~ 68950793 (+) False LOC110494470
TU1692079 other upstream 471355 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 933486 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1729255 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1762195 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1878447 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 336967 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 397273 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2053584 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2242261 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2581154 71178513 ~ 71180429 (+) True G1483346

Expression Profile