RNA id: TU1692684



Basic Information


Item Value
RNA id TU1692684
length 311
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1480103
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68597978 ~ 68598288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcttctgtctgtccactttaccataaaggcctgattgctggagtgctgcagagactgttatccttctggaaggttctcccatttccacagaggaactctggagctctgtcagagtgaccatcgggttcttggtcaccttcaatgctgcagacattttttggtacccttccccagatctgtgcctcgacataatcctgtcttggagctctacggacaattccttcaacctcatggcttggtttttcctctgacgtgcactgtcaactgtgggagcttatatagacaggtgtgtgcatttccaagtcatgtcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1692683 lncRNA upstream 619 68597135 ~ 68597359 (+) True G1480102
TU1692329 lncRNA upstream 101932 68495832 ~ 68496046 (+) True G1479778
TU1692317 lncRNA upstream 118064 68479611 ~ 68479914 (+) True G1479766
TU1692305 lncRNA upstream 127131 68469790 ~ 68470847 (+) True G1479757
TU1692268 lncRNA upstream 172027 68425483 ~ 68425951 (+) True G1479725
TU1692702 lncRNA downstream 33520 68631808 ~ 68660462 (+) True G1480120
TU1692703 lncRNA downstream 43007 68641295 ~ 68648016 (+) True G1480121
TU1692705 lncRNA downstream 63880 68662168 ~ 68664035 (+) True G1480123
TU1692708 lncRNA downstream 108421 68706709 ~ 68708059 (+) True G1480126
TU1692694 lncRNA downstream 111558 68709846 ~ 68710426 (+) True G1480112
XM_036950522.1 mRNA upstream 4360 68526861 ~ 68593618 (+) True LOC110494461
XR_005037057.1 mRNA upstream 29724 68526861 ~ 68568254 (+) False LOC110494461
XM_021569534.2 mRNA upstream 110244 68484786 ~ 68487734 (+) True LOC110494460
LOC110493242 mRNA upstream 178054 68418717 ~ 68419924 (+) True LOC110493242
XR_002469276.2 mRNA upstream 179696 68415994 ~ 68418282 (+) True LOC110494454
XM_021569536.2 mRNA downstream 3642 68601930 ~ 68625052 (+) False LOC101268937
XM_021569537.2 mRNA downstream 3642 68601930 ~ 68625052 (+) False LOC101268937
XM_036950523.1 mRNA downstream 3642 68601930 ~ 68625052 (+) True LOC101268937
XR_002469280.2 mRNA downstream 70844 68669132 ~ 68671682 (+) True LOC110494465
XM_021569563.2 mRNA downstream 329676 68927964 ~ 68950793 (+) False LOC110494470
TU1692079 other upstream 472198 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 934329 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1730098 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1763038 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1879290 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 336038 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 396344 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2052655 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2241332 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2580225 71178513 ~ 71180429 (+) True G1483346

Expression Profile