RNA id: TU1692703


Basic Information

Item Value
RNA id TU1692703
length 1514
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1480121
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68641295 ~ 68648016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATCTGAACAGAAGATGAAAAACACCCTTGGATTCACCCACACATTTAAGAGTTGTCCTTGACCAACTCACGTTATTTTTGCTCAAAGTTCAAGTAGACTTTACCAAAGGGGAGTCAAAGGGCCGCTGTTGTGAAATGTTCATTGACTTCAGCTTGCAAAGCTTTTTAATTTTAATAGTTTGTCATGTTGCACGTTATGAGACATAATGAAGGACATGTTGATGCAGGTGAGTGGTTTGCAGGTGAGTTagctgttaccatagacttccagtcattagcATTGACTTTAACTTTAAAATGGAAGAAGATAAAGGGCTTCCATGCCAATATCCCAAAGGATCCCTTTAAGCTGTTTATCAGGTTTTGACCACAGGTTTATacaaagggagggagaaagtttGTGTATTTGAAACATGAAAGCAAACCATCTATGACAGGCATGCACCCCTTTTTTGAAGGCCCTTGGATCAATCCAGGCggggtctcaatttactgttgcTAGTTAGAATGGTataatacacaaggtgcaatttcaaaacttggttgtgcatcagcagtttttcgaTTATGTCCTGCACTGATTGTCACTCAATAAGCCCAAGTCAGCTAAACATTTTTAAATTGATAAattagtctagcggccagctttctaaacttgtagtaggcctaatcatggttgaattactgaccggggtcccccattgattttgttagtcactctcactcagatctcatattaaaaactgcaaacatttatCTCCACCCAATGACAAAAATTTgtacaattgcaggaaattagctgtaaaactgctaaTTTTCCTCAGCccaatggcaaaatgagtagaattacaTGAAATTTGTTATGAAATTGCAAACTCTTCTCTCagccctatggcaaaatgtgtataatttcAGCATGTCACTGCAGCCCCttatgatgagttcagatttttgtgTGGCCCCCACCACCATCAAAGTTGCCCAACCCTGATCTATTGTGTTCCAGTTTGCGTTCGCACAGGAATTTTCTGGAAAGTTGCACACGTGGATGTAGGGAAAGCCTTGCTGAACCAGAAGTGTATTCATTACGtagattctgttgcaaaatgtttcacAACAGAAACAGTTTATTCCAAACGTAAAATGTTTTGCACcgaaaacaagagtttctattggtcaAATTCAGGTAGTTCCATCCCTGTTTCGCTACATTTGGTGTTTGATTCTTTAACGGTTTTCATTGCAACACTTAGGGTGAATCCCAAACCATCCCCTCATTCACATTACCAATAAGCATTCCGTTATGTTGCGCCGGATGTCATGCATTTCAATGGGGACGTCCAGAAAGGAGTGGAAACGCAAAACCCCTTGCAGTTGAGGCTTCCATTGCAAGACGGAATCCACCTATTTTGAAAATGTTAAAACTATTCATAGTCTTCAGCCCAGCCAAAGTCCTATGGAGTCAAATATGTAttgaattcaaaatgaaataaATCCTGAACATGAAAAATAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692684 lncRNA upstream 43007 68597978 ~ 68598288 (+) True G1480103
TU1692683 lncRNA upstream 43936 68597135 ~ 68597359 (+) True G1480102
TU1692329 lncRNA upstream 145249 68495832 ~ 68496046 (+) True G1479778
TU1692317 lncRNA upstream 161381 68479611 ~ 68479914 (+) True G1479766
TU1692305 lncRNA upstream 170448 68469790 ~ 68470847 (+) True G1479757
TU1692705 lncRNA downstream 14152 68662168 ~ 68664035 (+) True G1480123
TU1692708 lncRNA downstream 58693 68706709 ~ 68708059 (+) True G1480126
TU1692694 lncRNA downstream 61830 68709846 ~ 68710426 (+) True G1480112
TU1692732 lncRNA downstream 62937 68710953 ~ 68712162 (+) True G1480144
TU1692740 lncRNA downstream 82781 68730797 ~ 68731068 (+) True G1480152
XM_021569536.2 mRNA upstream 16243 68601930 ~ 68625052 (+) False LOC101268937
XM_021569537.2 mRNA upstream 16243 68601930 ~ 68625052 (+) False LOC101268937
XM_036950523.1 mRNA upstream 16243 68601930 ~ 68625052 (+) True LOC101268937
XM_036950522.1 mRNA upstream 47677 68526861 ~ 68593618 (+) True LOC110494461
XR_005037057.1 mRNA upstream 73041 68526861 ~ 68568254 (+) False LOC110494461
XR_002469280.2 mRNA downstream 21116 68669132 ~ 68671682 (+) True LOC110494465
XM_021569563.2 mRNA downstream 279948 68927964 ~ 68950793 (+) False LOC110494470
XM_021569564.2 mRNA downstream 286291 68934307 ~ 68950793 (+) False LOC110494470
XM_021569562.2 mRNA downstream 286292 68934308 ~ 68950793 (+) False LOC110494470
XM_036950531.1 mRNA downstream 287114 68935130 ~ 68950793 (+) True LOC110494470
TU1692079 other upstream 515515 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 977646 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1773415 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1806355 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1922607 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 286310 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 346616 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2002927 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2191604 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2530497 71178513 ~ 71180429 (+) True G1483346

Expression Profile