RNA id: TU1692876


Basic Information

Item Value
RNA id TU1692876
length 242
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1480277
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68931226 ~ 68931467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatcacgctgtccgtagccgatgtgagtaagacctttaaacaggtcaacattcacaaggcagatgggccagatggattaccaggaggtgtgtactccgagcatgcgctgaccaactggcaagtgtctgcactgacatgttcaacctgtccctgaccgagtctgtaataccaacatatttcaagcagaccaccattgtccctttGCCcaggaacactaaggtaacctgcctaaattactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692875 lncRNA upstream 128 68930836 ~ 68931098 (+) True G1480276
TU1692762 lncRNA upstream 172540 68758420 ~ 68758686 (+) True G1480174
TU1692758 lncRNA upstream 175541 68754789 ~ 68755685 (+) True G1480170
TU1692750 lncRNA upstream 187100 68743549 ~ 68744126 (+) True G1480162
TU1692748 lncRNA upstream 190417 68740575 ~ 68740809 (+) True G1480160
TU1692852 lncRNA downstream 2859 68934326 ~ 68982317 (+) False G1480254
TU1692857 lncRNA downstream 5810 68937277 ~ 68983735 (+) True G1480258
TU1692854 lncRNA downstream 22982 68954449 ~ 69000797 (+) True G1480255
TU1693390 lncRNA downstream 200480 69131947 ~ 69132153 (+) True G1480732
TU1693427 lncRNA downstream 233528 69164995 ~ 69167365 (+) True G1480768
XR_002469280.2 mRNA upstream 259544 68669132 ~ 68671682 (+) True LOC110494465
XM_021569536.2 mRNA upstream 306174 68601930 ~ 68625052 (+) False LOC101268937
XM_021569537.2 mRNA upstream 306174 68601930 ~ 68625052 (+) False LOC101268937
XM_036950523.1 mRNA upstream 306174 68601930 ~ 68625052 (+) True LOC101268937
XM_036950522.1 mRNA upstream 337608 68526861 ~ 68593618 (+) True LOC110494461
XM_021569564.2 mRNA downstream 2840 68934307 ~ 68950793 (+) False LOC110494470
XM_021569562.2 mRNA downstream 2841 68934308 ~ 68950793 (+) False LOC110494470
XM_036950531.1 mRNA downstream 3663 68935130 ~ 68950793 (+) True LOC110494470
XM_021569560.2 mRNA downstream 46233 68977700 ~ 68999543 (+) False LOC110494469
XM_021569561.2 mRNA downstream 49845 68981312 ~ 68999543 (+) True LOC110494469
TU1692079 other upstream 805446 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1267577 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2063346 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 2096286 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 2212538 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 2859 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 63165 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 1719476 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1908153 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2247046 71178513 ~ 71180429 (+) True G1483346

Expression Profile