RNA id: TU1693532


Basic Information

Item Value
RNA id TU1693532
length 716
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G1480864
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69332905 ~ 69333620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAATCCCTGCCTATCACCCCACCAAGAGAACCCAGAGAATTACCTCATCCCACTCGGAGGCGAAGGAGGGCGATCTCTCCATCTGTTTGTTCCCAGAACTGCAGTTAGCCACAGACTCACAGCAGCTGTTCAGacccccatcctcctcacccaGGGGAGACACCAACAGGTCTGAGTCCGACTTGGAGAGGCTCCGGGTCAACTTTAGGTCCCCCGGAGGCTTCAGCCTGACTGGAGGGACAGCCACAGCCCCTGTCGACTCCCTGTCCTCAGCCTTGGCAGTGTGGACCACCGTGGCATAGATGGGATCAGCGTCCAGGAGGGAGGCTGACATTACTGTGGAGCTGCTTGTGTGGCAGTGTTAGGATCCTAGCCTCCCTGTACCCAGGCCTCAGGCAGCAGTCTCTCTTCTTGTACCAATGGTCAGTGCAGAGAGGGCTGTAAAACACTGGAGGATCCAGCAGTCTCAGTCTGTACAGAGCTTCCTGTTGAATTCTGAGGAAAAGCCAGAGAGAAGGGGTGATGTAAGAAACAGTGAGGCAGGAAATATCTCTGTCGTGACACTGATAAGAATCCGCCTACTAAATAATTTATGTTTAAAACATATTAAATCTATTCCATTTGGTGAAACGGAGCGTGTAAGAGAGAGGATTGCTGCGTGTGTCCATAGCTCAGATACAATCATCAGGGTCCACCCACTAGTTGTATCCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693528 lncRNA upstream 4859 69327838 ~ 69328046 (+) True G1480860
TU1693527 lncRNA upstream 5126 69327445 ~ 69327779 (+) True G1480859
TU1693523 lncRNA upstream 9879 69322790 ~ 69323026 (+) True G1480855
TU1693521 lncRNA upstream 14644 69318036 ~ 69318261 (+) True G1480853
TU1693520 lncRNA upstream 16167 69316297 ~ 69316738 (+) True G1480852
TU1693538 lncRNA downstream 5138 69338758 ~ 69339066 (+) True G1480870
TU1693540 lncRNA downstream 7467 69341087 ~ 69341298 (+) True G1480872
TU1693551 lncRNA downstream 30165 69363785 ~ 69363993 (+) True G1480883
TU1693553 lncRNA downstream 30510 69364130 ~ 69364586 (+) False G1480884
TU1693554 lncRNA downstream 31348 69364968 ~ 69365292 (+) False G1480884
XM_021569576.2 mRNA upstream 35923 69288804 ~ 69296982 (+) True LOC110494476
XM_036950533.1 mRNA upstream 49902 69239094 ~ 69283003 (+) False LOC110494475
XM_036950539.1 mRNA upstream 49902 69239094 ~ 69283003 (+) False LOC110494475
XM_036950536.1 mRNA upstream 50967 69239072 ~ 69281938 (+) False LOC110494475
XM_021569584.2 mRNA downstream 15265 69348885 ~ 69354495 (+) True LOC110494479
XR_005037269.1 mRNA downstream 17823 69351443 ~ 69351518 (+) True LOC118940683
XR_005037268.1 mRNA downstream 20200 69353820 ~ 69353895 (+) True LOC118940682
XM_021569588.2 mRNA downstream 26659 69360279 ~ 69362518 (+) True LOC110494481
XM_021569590.2 mRNA downstream 38067 69371687 ~ 69429659 (+) False LOC110494482
TU1692848 other upstream 333722 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 349427 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1207125 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1669256 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2465025 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1317323 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1506000 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1844893 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2048324 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2971103 72304723 ~ 72305412 (+) True G1484782

Expression Profile