RNA id: TU1693553


Basic Information

Item Value
RNA id TU1693553
length 457
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G1480884
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69364130 ~ 69365532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGCAGTCCCCCTCGGAGTGATCTGTTGAGCTGGTGGAGGAGCTGCATTCGTCTTCGTCTGATGGGCGCCCCAAAAACCTGTCCTGCTACAGGAACACACACCACTGTTATAGACTGAAGCCATATTTTGAACTTGTAGCTTACTGAAACAGTAAGACAATGGAGATGAACCTATATAAACCAAACCTGGTTGGTTTCCTTTCCCATTTCAGGTACAGAGCGAGTGACAGTGGAGTTCTGGGACTCTGGCTGCTTATTATGTAAAGAGGCAACATCATAAGACGCCCTTCTTTCTGCATTGACAACTGTGGGAAAGAAGAATACTACAGTTAGCAATAGTAAGCAGAGCTGCCACTTTATTGTTCAAATAGGCAGACTATACTAGACAAAATGTCCTTTGCTAATTCCTTCTGGTCCCATGGTCATATGAAATATTGACAACAGAGGTTGGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693551 lncRNA upstream 137 69363785 ~ 69363993 (+) True G1480883
TU1693540 lncRNA upstream 22832 69341087 ~ 69341298 (+) True G1480872
TU1693538 lncRNA upstream 25064 69338758 ~ 69339066 (+) True G1480870
TU1693532 lncRNA upstream 30510 69332905 ~ 69333620 (+) True G1480864
TU1693528 lncRNA upstream 36084 69327838 ~ 69328046 (+) True G1480860
TU1693554 lncRNA downstream 382 69364968 ~ 69365292 (+) False G1480884
TU1693555 lncRNA downstream 382 69364968 ~ 69365532 (+) True G1480884
TU1693559 lncRNA downstream 986 69365572 ~ 69366420 (+) False G1480885
TU1693560 lncRNA downstream 986 69365572 ~ 69366645 (+) False G1480885
TU1693558 lncRNA downstream 1133 69365719 ~ 69366420 (+) False G1480885
XM_021569588.2 mRNA upstream 1612 69360279 ~ 69362518 (+) True LOC110494481
XM_021569584.2 mRNA upstream 9635 69348885 ~ 69354495 (+) True LOC110494479
XR_005037268.1 mRNA upstream 10235 69353820 ~ 69353895 (+) True LOC118940682
XR_005037269.1 mRNA upstream 12612 69351443 ~ 69351518 (+) True LOC118940683
XM_021569576.2 mRNA upstream 67148 69288804 ~ 69296982 (+) True LOC110494476
XM_021569590.2 mRNA downstream 7101 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA downstream 9256 69373842 ~ 69429659 (+) True LOC110494482
XM_036950546.1 mRNA downstream 735785 70100371 ~ 70405132 (+) False LOC110494487
XM_036950543.1 mRNA downstream 735796 70100382 ~ 70414992 (+) False LOC110494487
XM_036950544.1 mRNA downstream 735796 70100382 ~ 70414992 (+) False LOC110494487
TU1692848 other upstream 364947 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 380652 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1238350 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1700481 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2496250 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1286357 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1475034 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1813927 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2017358 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2940137 72304723 ~ 72305412 (+) True G1484782

Expression Profile