RNA id: TU1693567


Basic Information

Item Value
RNA id TU1693567
length 758
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1480891
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69430263 ~ 69431020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCACGCACAGGCATTGACTCTACAGACCTTCTTGCCATAGCCTGCATTGCATTTAAAGCTAATTGATTGACATATTTGCCTTGGCATTTCCTGTTTCAGTGACTTTTGTGTACCGTGCTGGTCTAAATGTTGATCATTTACTGTGCTGTTCCCCTTATTGATATTGAGCTGTGATTGATTGTTTCTTACAGTCAAAATATAGACATTTTGATTAAGTGTTTCTGTCAATGTTGTGTACTCGGCAGTCTACTCTACACAATTCCCCATCGGTTATCTTTCAAAGAGCCATTCATTAAACTGAGAGTAGAACTATTTTGATAACCAAGGAATGACTTCAAATAAAATTAGCACGGTGTTAGCAACTTATCACTAAAAAGGAGGCAACATTTTATTTCCTGAGCTGAGATTATCAACTAGAGGTGAACCAGGACAGGGACTAATGACTGTGTCTCTTTCTGCTCAGTGATGTTATTATATAGTGTGTGAGAATTAAAAGAGGCTAACTCTTCTACAACCCTGGCTTTCCCCTTGAATGAGTCTTTTGATTATATTGTACATTTTTGTTTACTTTGTTAAACTAAAGTAATAGTGAGTGGCATTTGTTAAAGACATTTAACATGATTAAGTGTAGCCTGTCCAGTGATTGCATGGTGTGATTCAAAATGTGAGGGAGAGGATAAAACATGTATTGTATAAACACAGCACTAATTGTAAGCTACACACATAAAATAGCCACCTTTATTCTGTAATCTTCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693566 lncRNA upstream 59980 69369990 ~ 69370283 (+) True G1480890
TU1693565 lncRNA upstream 60624 69369385 ~ 69369639 (+) True G1480889
TU1693568 lncRNA upstream 61369 69368239 ~ 69368894 (+) True G1480892
TU1693561 lncRNA upstream 63618 69365719 ~ 69366645 (+) False G1480885
TU1693564 lncRNA downstream 857 69431877 ~ 69434164 (+) True G1480888
TU1693603 lncRNA downstream 6144 69437164 ~ 69437477 (+) True G1480927
TU1693604 lncRNA downstream 6505 69437525 ~ 69437797 (+) True G1480928
TU1693790 lncRNA downstream 16249 69447269 ~ 69447468 (+) True G1481101
TU1693860 lncRNA downstream 90447 69521467 ~ 69524341 (+) True G1481163
XM_021569590.2 mRNA upstream 604 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA upstream 604 69373842 ~ 69429659 (+) True LOC110494482
XM_021569588.2 mRNA upstream 67745 69360279 ~ 69362518 (+) True LOC110494481
XM_021569584.2 mRNA upstream 75768 69348885 ~ 69354495 (+) True LOC110494479
XR_005037268.1 mRNA upstream 76368 69353820 ~ 69353895 (+) True LOC118940682
XM_036950546.1 mRNA downstream 669351 70100371 ~ 70405132 (+) False LOC110494487
XM_036950543.1 mRNA downstream 669362 70100382 ~ 70414992 (+) False LOC110494487
XM_036950544.1 mRNA downstream 669362 70100382 ~ 70414992 (+) False LOC110494487
XM_036950545.1 mRNA downstream 669362 70100382 ~ 70414992 (+) False LOC110494487
XM_036950547.1 mRNA downstream 990236 70421256 ~ 70429407 (+) False c17h3orf14
TU1692848 other upstream 431080 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 446785 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1304483 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1766614 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2562383 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1219923 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1408600 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1747493 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 1950924 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2873703 72304723 ~ 72305412 (+) True G1484782

Expression Profile