RNA id: TU1694019


Basic Information

Item Value
RNA id TU1694019
length 487
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1481316
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69738096 ~ 69742749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgttacggtgcgtgaatgaggacccaaaagcgaattaacgtaaacagagcttctttaataacaaaacaaacgtaggctcagatggaccggcagattccgacaggacaggacagggttgcagcaaacatgacgatagtctggttcaggcatgaataacacaaacaagaatccgacaaagacagaaacaaaaacagagagagatatagaggactaatcagagggaaaaagggaacaggtgggaaaaggggtgacgaggtagttaggaggagacaaggaacagctgggggaaagagggggagaaaaggtaacctaataacgaccagcagagggagacagggtgaagggaaaggacagaaacaagacacaacatgacaatacatgacatccgTAGCTGTTCCCCACTCTGCTGTCTACGTAACTTCTGCTCAGTTCTGCTCCCACTGCTCCGCTCCCACTGCTCCACTGCCGCTTCCCCCTCATTGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693972 lncRNA upstream 57644 69680248 ~ 69680452 (+) True G1481271
TU1693971 lncRNA upstream 58097 69679799 ~ 69679999 (+) True G1481270
TU1693967 lncRNA upstream 66285 69671604 ~ 69671811 (+) True G1481266
TU1693964 lncRNA upstream 77284 69660513 ~ 69660812 (+) True G1481263
TU1693936 lncRNA upstream 110386 69627506 ~ 69627710 (+) True G1481235
TU1694259 lncRNA downstream 32667 69775416 ~ 69775630 (+) True G1481551
TU1694271 lncRNA downstream 38520 69781269 ~ 69781673 (+) True G1481563
TU1694276 lncRNA downstream 40645 69783394 ~ 69783611 (+) True G1481568
TU1694287 lncRNA downstream 44508 69787257 ~ 69787487 (+) True G1481576
TU1694296 lncRNA downstream 47129 69789878 ~ 69793133 (+) True G1481584
XM_021569590.2 mRNA upstream 308437 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA upstream 308437 69373842 ~ 69429659 (+) True LOC110494482
XM_021569588.2 mRNA upstream 375578 69360279 ~ 69362518 (+) True LOC110494481
XR_005037268.1 mRNA upstream 384201 69353820 ~ 69353895 (+) True LOC118940682
XR_005037269.1 mRNA upstream 386578 69351443 ~ 69351518 (+) True LOC118940683
XM_036950546.1 mRNA downstream 357622 70100371 ~ 70405132 (+) False LOC110494487
XM_036950543.1 mRNA downstream 357633 70100382 ~ 70414992 (+) False LOC110494487
XM_036950544.1 mRNA downstream 357633 70100382 ~ 70414992 (+) False LOC110494487
XM_036950545.1 mRNA downstream 357633 70100382 ~ 70414992 (+) False LOC110494487
XM_036950547.1 mRNA downstream 678507 70421256 ~ 70429407 (+) False c17h3orf14
TU1692848 other upstream 738913 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 754618 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1612316 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2074447 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2870216 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 908194 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1096871 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1435764 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 1639195 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2561974 72304723 ~ 72305412 (+) True G1484782

Expression Profile