RNA id: TU1694287


Basic Information

Item Value
RNA id TU1694287
length 231
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G1481576
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69787257 ~ 69787487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcgctagagtgcgatgggacaaggacatccctgctggccaaaccctcccctaacctggacgacgctgggccaattgtgcaccgccccatcgGTCTCCCAGTCGCAgtcggctgcaacagagcctggacttaaaccagtatctctagtggcacagctagcaactgcgatgcagtgccttagaccactgcaccacactttatacactgcagtgctagctagctgtagtttat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1694276 lncRNA upstream 3646 69783394 ~ 69783611 (+) True G1481568
TU1694271 lncRNA upstream 5584 69781269 ~ 69781673 (+) True G1481563
TU1694259 lncRNA upstream 11627 69775416 ~ 69775630 (+) True G1481551
TU1693980 lncRNA upstream 15409 69688266 ~ 69771848 (+) True G1481278
TU1694019 lncRNA upstream 44508 69738096 ~ 69742749 (+) True G1481316
TU1694296 lncRNA downstream 2391 69789878 ~ 69793133 (+) True G1481584
TU1694360 lncRNA downstream 100281 69887768 ~ 69888059 (+) True G1481646
TU1694448 lncRNA downstream 204370 69991857 ~ 69994114 (+) True G1481734
TU1694668 lncRNA downstream 489766 70277253 ~ 70280126 (+) True G1481946
TU1694712 lncRNA downstream 549603 70337090 ~ 70368761 (+) True G1481989
XM_021569590.2 mRNA upstream 357598 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA upstream 357598 69373842 ~ 69429659 (+) True LOC110494482
XM_021569588.2 mRNA upstream 424739 69360279 ~ 69362518 (+) True LOC110494481
XR_005037268.1 mRNA upstream 433362 69353820 ~ 69353895 (+) True LOC118940682
XR_005037269.1 mRNA upstream 435739 69351443 ~ 69351518 (+) True LOC118940683
XM_036950546.1 mRNA downstream 312884 70100371 ~ 70405132 (+) False LOC110494487
XM_036950543.1 mRNA downstream 312895 70100382 ~ 70414992 (+) False LOC110494487
XM_036950544.1 mRNA downstream 312895 70100382 ~ 70414992 (+) False LOC110494487
XM_036950545.1 mRNA downstream 312895 70100382 ~ 70414992 (+) False LOC110494487
XM_036950547.1 mRNA downstream 633769 70421256 ~ 70429407 (+) False c17h3orf14
TU1692848 other upstream 788074 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 803779 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1661477 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2123608 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2919377 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 863456 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1052133 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1391026 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 1594457 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2517236 72304723 ~ 72305412 (+) True G1484782

Expression Profile