RNA id: TU1694770



Basic Information


Item Value
RNA id TU1694770
length 495
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1482046
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70462736 ~ 70525606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGAtagttgtatttttattttgttggCCCCAGTTctgtagcctgggtgccagtctgtttctgctctcttgtcAACTGCTTAGGAAATTGGTTTGACAATGACAATGGAGAAGGCAAAAagcacacacagatctgggaccaggctactagtTTCGTAGCCTCCCATAAGGCAGAAGCACAATGACTCCAGCAGTAACTTTACACAGAGAACAAACACACTTTTTGTGAGGATACCTGGGACATACAGTAACTGCACACGGGacaatgtacagtgtgtgtatatagaaaACAATATCAGCGGCAGAGAAAAGACTGGCATACATCATCTCTCACAATCCAGATATAAAAGTGTGGGAACATCTCCTGGAATGGCTGAAGTATAGGGGACACAGAAGAAAGTCTCTTTTCCCTTCATGATTTCATATTTTTGTGCTGACTGCTATTATACAGTGAGCTTCAAAAATATTGGGACCGTGacaaatgtgccgccgcccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1694767 lncRNA upstream 3427 70459075 ~ 70459309 (+) True G1482043
TU1694762 lncRNA upstream 12393 70450126 ~ 70450343 (+) True G1482038
TU1694757 lncRNA upstream 21929 70439316 ~ 70440807 (+) True G1482033
TU1694745 lncRNA upstream 47052 70415406 ~ 70415684 (+) True G1482021
TU1694535 lncRNA upstream 47731 70413289 ~ 70415005 (+) False LOC110494487
TU1694835 lncRNA downstream 24363 70549969 ~ 70550515 (+) True G1482106
TU1695500 lncRNA downstream 94066 70619672 ~ 70619879 (+) True G1482725
TU1695503 lncRNA downstream 97282 70622888 ~ 70623220 (+) True G1482728
TU1695512 lncRNA downstream 101235 70626841 ~ 70627200 (+) True G1482737
TU1695598 lncRNA downstream 326322 70851928 ~ 70944023 (+) False slc2a9l1
XM_036950547.1 mRNA upstream 33329 70421256 ~ 70429407 (+) False c17h3orf14
XM_021569598.2 mRNA upstream 33329 70423680 ~ 70429407 (+) False c17h3orf14
XM_021569600.2 mRNA upstream 33329 70423822 ~ 70429407 (+) False c17h3orf14
XM_021569599.2 mRNA upstream 33329 70425774 ~ 70429407 (+) True c17h3orf14
XM_036950545.1 mRNA upstream 47744 70100382 ~ 70414992 (+) False LOC110494487
XM_021569602.2 mRNA downstream 112598 70638204 ~ 70656059 (+) False nampt2
XM_036950558.1 mRNA downstream 112599 70638205 ~ 70656059 (+) False nampt2
XM_021569605.2 mRNA downstream 146045 70671651 ~ 70712982 (+) True LOC110494491
NM_001124751.1 mRNA downstream 201976 70727582 ~ 70738226 (+) True mx2
XM_021569608.2 mRNA downstream 222231 70747837 ~ 70759905 (+) True LOC110494492
TU1692848 other upstream 1463553 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1479258 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2336956 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2799087 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 3594856 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 125337 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 314014 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 652907 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 856338 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1779117 72304723 ~ 72305412 (+) True G1484782

Expression Profile