RNA id: TU1694783



Basic Information


Item Value
RNA id TU1694783
length 326
lncRNA type intronic
GC content 0.33
exon number 2
gene id G1482059
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70483932 ~ 70484312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaatgaactgtctgtatgtatggtatgtatgtatggtATGTATGTTATGTTTGTtatgtatgttatgttatgtatgtatgtatggtatgtatgtatgttatgtatgttatgtatgtatgtatgtatgtatgtatggggtGAATTTACAGGGAGATGGGCCATGTTAGTAGATGTACACAGGAAGATTATTTGACTCTGAATCATGCCACTGGGCATAATGTGTTGAAACAAATTTGACATGAGAGATAAGTTTCATTTCAAAATATATAGCTAAGCGAGAATAGGGAAACAGAAACAGAAGAATATGTGTTTGGAAAGGTTTAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1694767 lncRNA upstream 24623 70459075 ~ 70459309 (+) True G1482043
TU1694762 lncRNA upstream 33589 70450126 ~ 70450343 (+) True G1482038
TU1694757 lncRNA upstream 43125 70439316 ~ 70440807 (+) True G1482033
TU1694745 lncRNA upstream 68248 70415406 ~ 70415684 (+) True G1482021
TU1694536 lncRNA upstream 69024 70413289 ~ 70414908 (+) True LOC110494487
TU1694835 lncRNA downstream 65657 70549969 ~ 70550515 (+) True G1482106
TU1695500 lncRNA downstream 135360 70619672 ~ 70619879 (+) True G1482725
TU1695503 lncRNA downstream 138576 70622888 ~ 70623220 (+) True G1482728
TU1695512 lncRNA downstream 142529 70626841 ~ 70627200 (+) True G1482737
TU1695598 lncRNA downstream 367616 70851928 ~ 70944023 (+) False slc2a9l1
XM_036950547.1 mRNA upstream 54525 70421256 ~ 70429407 (+) False c17h3orf14
XM_021569598.2 mRNA upstream 54525 70423680 ~ 70429407 (+) False c17h3orf14
XM_021569600.2 mRNA upstream 54525 70423822 ~ 70429407 (+) False c17h3orf14
XM_021569599.2 mRNA upstream 54525 70425774 ~ 70429407 (+) True c17h3orf14
XM_036950545.1 mRNA upstream 68940 70100382 ~ 70414992 (+) False LOC110494487
XM_021569602.2 mRNA downstream 153892 70638204 ~ 70656059 (+) False nampt2
XM_036950558.1 mRNA downstream 153893 70638205 ~ 70656059 (+) False nampt2
XM_021569605.2 mRNA downstream 187339 70671651 ~ 70712982 (+) True LOC110494491
NM_001124751.1 mRNA downstream 243270 70727582 ~ 70738226 (+) True mx2
XM_021569608.2 mRNA downstream 263525 70747837 ~ 70759905 (+) True LOC110494492
TU1692848 other upstream 1484749 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1500454 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2358152 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2820283 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 3616052 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 166631 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 355308 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 694201 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 897632 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1820411 72304723 ~ 72305412 (+) True G1484782

Expression Profile