RNA id: TU1695756


Basic Information

Item Value
RNA id TU1695756
length 232
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1482962
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71079289 ~ 71079520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTATGAAatcctgtactgtactctgcAACACTCTGCTAGCCTGCAGGTATAAAAACCATATGACCTAAGAAAATAGTTGCCTAATACACAGAACCTAGCCCGGTTAAGTGTGTTAAGTCCATATCAGTGTAACACATCTGAAAGGAATTCTCTATCGTAAACAGCACCAAAGTGAAACTCTTTTCTGATATAGTTGGGTTTAGCGACCTCTGTGATCAATATTCTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1695755 lncRNA upstream 1582 71077407 ~ 71077707 (+) True G1482961
TU1695753 lncRNA upstream 3720 71075366 ~ 71075569 (+) True G1482959
TU1695598 lncRNA upstream 135266 70851928 ~ 70944023 (+) False slc2a9l1
TU1695666 lncRNA upstream 138555 70940431 ~ 70940734 (+) True G1482873
TU1695601 lncRNA upstream 224133 70852809 ~ 70855156 (+) True slc2a9l1
TU1696601 lncRNA downstream 368387 71447907 ~ 71448238 (+) True G1483721
TU1696618 lncRNA downstream 398948 71478468 ~ 71478743 (+) True G1483735
TU1696606 lncRNA downstream 423895 71503415 ~ 71518363 (+) True slc25a26
TU1696749 lncRNA downstream 573602 71653122 ~ 71655783 (+) False G1483842
TU1696751 lncRNA downstream 573602 71653122 ~ 71655783 (+) True G1483842
XM_036950562.1 mRNA upstream 217162 70855148 ~ 70862127 (+) False slc2a9l1
XM_036950561.1 mRNA upstream 217162 70855159 ~ 70862127 (+) False slc2a9l1
XM_021569612.2 mRNA upstream 217162 70855410 ~ 70862127 (+) False slc2a9l1
XM_036950559.1 mRNA upstream 231899 70809971 ~ 70847390 (+) False LOC110494494
NM_001171901.1 mRNA upstream 277671 70793615 ~ 70801618 (+) True mx
LOC110494500 mRNA downstream 92493 71172013 ~ 71173244 (+) True LOC110494500
XM_036950570.1 mRNA downstream 370140 71449660 ~ 71518366 (+) False slc25a26
XM_036950571.1 mRNA downstream 370140 71449660 ~ 71518366 (+) False slc25a26
XM_021569629.2 mRNA downstream 591135 71670655 ~ 71678016 (+) False kbtbd8
XM_021567510.2 mRNA downstream 598869 71678389 ~ 71688655 (+) False LOC110493246
TU1695603 other upstream 238059 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 423232 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2080106 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 2095811 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2953509 68122538 ~ 68125780 (+) True G1479621
TU1696175 other downstream 98993 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 302424 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1225203 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1375043 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1965217 73044737 ~ 73045588 (+) True LOC110494525

Expression Profile