RNA id: TU1696618



Basic Information


Item Value
RNA id TU1696618
length 208
lncRNA type intronic
GC content 0.51
exon number 2
gene id G1483735
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71478468 ~ 71478743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggggagagactggAGGTGGGTCAAAAGGAGAGATTGGGAGAGACTGGAGGTAGATCAAGAgaaggagagtggggagagactggaggggttgagaggggtggtcatgagAGCAATAGAAGCAATACGGACATAGAGACTGAAGAACTGAATAATCCATGTCCACAATGTCAGTGCTGTTTCACCTGAGAATGGGGGATGGAAGAGCGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1696601 lncRNA upstream 30230 71447907 ~ 71448238 (+) True G1483721
TU1695756 lncRNA upstream 398948 71079289 ~ 71079520 (+) True G1482962
TU1695755 lncRNA upstream 400761 71077407 ~ 71077707 (+) True G1482961
TU1695753 lncRNA upstream 402899 71075366 ~ 71075569 (+) True G1482959
TU1695666 lncRNA upstream 537734 70940431 ~ 70940734 (+) True G1482873
TU1696606 lncRNA downstream 24672 71503415 ~ 71518363 (+) True slc25a26
TU1696749 lncRNA downstream 174379 71653122 ~ 71655783 (+) False G1483842
TU1696751 lncRNA downstream 174379 71653122 ~ 71655783 (+) True G1483842
TU1696878 lncRNA downstream 198169 71676912 ~ 71678012 (+) True kbtbd8
TU1696909 lncRNA downstream 213179 71691922 ~ 71692164 (+) True G1483989
LOC110494500 mRNA upstream 305224 71172013 ~ 71173244 (+) True LOC110494500
XM_036950562.1 mRNA upstream 616341 70855148 ~ 70862127 (+) False slc2a9l1
XM_036950561.1 mRNA upstream 616341 70855159 ~ 70862127 (+) False slc2a9l1
XM_021569612.2 mRNA upstream 616341 70855410 ~ 70862127 (+) False slc2a9l1
XM_036950559.1 mRNA upstream 631078 70809971 ~ 70847390 (+) False LOC110494494
XM_021569629.2 mRNA downstream 191912 71670655 ~ 71678016 (+) False kbtbd8
XM_021567510.2 mRNA downstream 199646 71678389 ~ 71688655 (+) False LOC110493246
XM_036950572.1 mRNA downstream 199840 71678583 ~ 71688655 (+) False LOC110493246
XM_036950573.1 mRNA downstream 199840 71678583 ~ 71688655 (+) True LOC110493246
XR_005037244.1 mRNA downstream 223902 71702645 ~ 71702701 (+) True LOC118940657
TU1696516 other upstream 96196 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 298039 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 637238 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 822411 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2479285 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 825980 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 975820 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1565994 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 1644083 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1802517 73281260 ~ 73282019 (+) True G1485819

Expression Profile