RNA id: TU1696749


Basic Information

Item Value
RNA id TU1696749
length 243
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G1483842
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71653122 ~ 71655783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATGTGTTGTAGATGTCTCCTACACTACCACTCAGAGGGGGGATGTGGTGTAGATGTCTCCTACACTACTACTCAGAGGAGGGATGTGGTGTAGATGTCTCCTACACTACCACTCAGAGAGGGGATGTGGTGTAGATGTCTCCCACACTACTACTCAGAGGAGGGATGTGGTGTAGATGTCTCCTACAATACCACTCAGAGGAGGGATGTGGTGTAGATGTCTCCTACAATACCACTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1696606 lncRNA upstream 134759 71503415 ~ 71518363 (+) True slc25a26
TU1696618 lncRNA upstream 174379 71478468 ~ 71478743 (+) True G1483735
TU1696601 lncRNA upstream 204884 71447907 ~ 71448238 (+) True G1483721
TU1695756 lncRNA upstream 573602 71079289 ~ 71079520 (+) True G1482962
TU1695755 lncRNA upstream 575415 71077407 ~ 71077707 (+) True G1482961
TU1696878 lncRNA downstream 21129 71676912 ~ 71678012 (+) True kbtbd8
TU1696909 lncRNA downstream 36139 71691922 ~ 71692164 (+) True G1483989
TU1696975 lncRNA downstream 115024 71770807 ~ 71776235 (+) True G1484054
TU1697019 lncRNA downstream 169647 71825430 ~ 71827175 (+) True G1484093
TU1697030 lncRNA downstream 176994 71832777 ~ 71833688 (+) True G1484102
XM_036950570.1 mRNA upstream 134756 71449660 ~ 71518366 (+) False slc25a26
XM_036950571.1 mRNA upstream 134756 71449660 ~ 71518366 (+) False slc25a26
LOC110494500 mRNA upstream 479878 71172013 ~ 71173244 (+) True LOC110494500
XM_036950562.1 mRNA upstream 790995 70855148 ~ 70862127 (+) False slc2a9l1
XM_036950561.1 mRNA upstream 790995 70855159 ~ 70862127 (+) False slc2a9l1
XM_021569629.2 mRNA downstream 14872 71670655 ~ 71678016 (+) False kbtbd8
XM_021567510.2 mRNA downstream 22606 71678389 ~ 71688655 (+) False LOC110493246
XM_036950572.1 mRNA downstream 22800 71678583 ~ 71688655 (+) False LOC110493246
XM_036950573.1 mRNA downstream 22800 71678583 ~ 71688655 (+) True LOC110493246
XR_005037244.1 mRNA downstream 46862 71702645 ~ 71702701 (+) True LOC118940657
TU1696516 other upstream 270850 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 472693 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 811892 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 997065 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2653939 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 648940 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 798780 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1388954 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 1467043 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1625477 73281260 ~ 73282019 (+) True G1485819

Expression Profile