RNA id: TU1696975



Basic Information


Item Value
RNA id TU1696975
length 423
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1484054
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71770807 ~ 71776235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTTTCCTTTCCCTCGCAATAAAATTGATTGATAATAAGATTATAGTAAATAAAACTGTCCCATAAGAGCTTCTTTTAAAAAAGTAAAATGTAAAAGAGAATGGTATCAACCCCCAAGGCACAAGTCACATTTTTGCTGCTGATAAATATGCATAACAAACTCACCATTACACTACTGTCTTTCTAAATGAAATCAACCTCTTCTTCCTCCCTATTATTCAGTTAGGCCTCATTTCAATTCATTTGTGAAGTAAGGTGCACAATTATCACCAATCCatccatttgtcattcattcagcgacgagagagagagatgcattagtgcctggctgggtaccaacatcctacagcacattgaCATGGCGAGTTAAGTTGGGAATAGGTGTGAGAAAAACTGGTAAAAAGGCCATGATATCCTTTTCGg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1696909 lncRNA upstream 78643 71691922 ~ 71692164 (+) True G1483989
TU1696878 lncRNA upstream 92795 71676912 ~ 71678012 (+) True kbtbd8
TU1696749 lncRNA upstream 115024 71653122 ~ 71655783 (+) False G1483842
TU1696751 lncRNA upstream 115024 71653122 ~ 71655783 (+) True G1483842
TU1696606 lncRNA upstream 252444 71503415 ~ 71518363 (+) True slc25a26
TU1697019 lncRNA downstream 49195 71825430 ~ 71827175 (+) True G1484093
TU1697030 lncRNA downstream 56542 71832777 ~ 71833688 (+) True G1484102
TU1697185 lncRNA downstream 109846 71886081 ~ 71886293 (+) True G1484247
TU1697190 lncRNA downstream 113456 71889691 ~ 71889952 (+) True G1484252
TU1697231 lncRNA downstream 164005 71940240 ~ 71985031 (+) True G1484288
XR_005037244.1 mRNA upstream 68106 71702645 ~ 71702701 (+) True LOC118940657
XM_021567510.2 mRNA upstream 82152 71678389 ~ 71688655 (+) False LOC110493246
XM_036950572.1 mRNA upstream 82152 71678583 ~ 71688655 (+) False LOC110493246
XM_036950573.1 mRNA upstream 82152 71678583 ~ 71688655 (+) True LOC110493246
XM_021569629.2 mRNA upstream 92791 71670655 ~ 71678016 (+) False kbtbd8
XR_005037062.1 mRNA downstream 203665 71979900 ~ 72212154 (+) False LOC110494505
XM_021569633.2 mRNA downstream 203665 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA downstream 203665 71979900 ~ 72220074 (+) False LOC110494505
XM_036950582.1 mRNA downstream 677124 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA downstream 677127 72453362 ~ 72523767 (+) False LOC110494508
TU1696516 other upstream 388535 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 590378 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 929577 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1114750 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2771624 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 528488 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 678328 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1268502 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 1346591 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1505025 73281260 ~ 73282019 (+) True G1485819

Expression Profile