RNA id: TU1697190


Basic Information

Item Value
RNA id TU1697190
length 262
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G1484252
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71889691 ~ 71889952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAATGCTGATTCATTTTCATATGTAACCCAATAGTGCTCTATGTCATATTGGTCATGTAATTACACAAGCAAGTCAATTAGTTATTCACTAATGTAGTGGGAACAAGAGAAAAAAACACTTATGATTTACAGGCTTGTCATATTGTTACTGTGTCTTGGCTAAAATTCAGTTTATATCTTATCAACGGGCATAATTGCCCCAGACACACCTCAATCTTGTTAATTACCAACACGAGTAAAAAGTAACACACTGTATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697185 lncRNA upstream 3398 71886081 ~ 71886293 (+) True G1484247
TU1697030 lncRNA upstream 56003 71832777 ~ 71833688 (+) True G1484102
TU1697019 lncRNA upstream 62516 71825430 ~ 71827175 (+) True G1484093
TU1696975 lncRNA upstream 113456 71770807 ~ 71776235 (+) True G1484054
TU1696909 lncRNA upstream 197527 71691922 ~ 71692164 (+) True G1483989
TU1697231 lncRNA downstream 50288 71940240 ~ 71985031 (+) True G1484288
TU1697240 lncRNA downstream 57070 71947022 ~ 71947311 (+) True G1484294
TU1697243 lncRNA downstream 60022 71949974 ~ 71953956 (+) True G1484297
TU1697260 lncRNA downstream 89960 71979912 ~ 72221849 (+) True LOC110494505
TU1697668 lncRNA downstream 335218 72225170 ~ 72225497 (+) True G1484705
XR_005037244.1 mRNA upstream 186990 71702645 ~ 71702701 (+) True LOC118940657
XM_021567510.2 mRNA upstream 201036 71678389 ~ 71688655 (+) False LOC110493246
XM_036950572.1 mRNA upstream 201036 71678583 ~ 71688655 (+) False LOC110493246
XM_036950573.1 mRNA upstream 201036 71678583 ~ 71688655 (+) True LOC110493246
XM_021569629.2 mRNA upstream 211675 71670655 ~ 71678016 (+) False kbtbd8
XR_005037062.1 mRNA downstream 89948 71979900 ~ 72212154 (+) False LOC110494505
XM_021569633.2 mRNA downstream 89948 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA downstream 89948 71979900 ~ 72220074 (+) False LOC110494505
XM_036950582.1 mRNA downstream 563407 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA downstream 563410 72453362 ~ 72523767 (+) False LOC110494508
TU1696516 other upstream 507419 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 709262 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1048461 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1233634 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2890508 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 414771 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 564611 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1154785 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 1232874 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1391308 73281260 ~ 73282019 (+) True G1485819

Expression Profile