RNA id: TU1697673


Basic Information

Item Value
RNA id TU1697673
length 219
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1484710
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72227409 ~ 72227627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttggtagtcatttaggcaggttaccttagtgttcttgggcacagggactatggtggtctgcttgaaacatgttggtattacagactcagacagggagaggttgaaaatgtcagtgaagacacttaccagttggtcagcgcatgcttggagtacacgtcctggtaatccgtctggcccagcggctttgtgaatgttgacctgtttaaaggtcttactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697668 lncRNA upstream 1912 72225170 ~ 72225497 (+) True G1484705
TU1697260 lncRNA upstream 5560 71979912 ~ 72221849 (+) True LOC110494505
TU1697231 lncRNA upstream 242378 71940240 ~ 71985031 (+) True G1484288
TU1697243 lncRNA upstream 273453 71949974 ~ 71953956 (+) True G1484297
TU1697240 lncRNA upstream 280098 71947022 ~ 71947311 (+) True G1484294
TU1697727 lncRNA downstream 39750 72267377 ~ 72267617 (+) True G1484762
TU1697733 lncRNA downstream 44165 72271792 ~ 72272615 (+) True G1484768
TU1697745 lncRNA downstream 72727 72300354 ~ 72300666 (+) True G1484780
TU1697748 lncRNA downstream 77898 72305525 ~ 72305727 (+) True G1484783
TU1697754 lncRNA downstream 87496 72315123 ~ 72349495 (+) False G1484785
XM_021569633.2 mRNA upstream 7335 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA upstream 7335 71979900 ~ 72220074 (+) False LOC110494505
XR_005037062.1 mRNA upstream 15255 71979900 ~ 72212154 (+) False LOC110494505
XR_005037244.1 mRNA upstream 524708 71702645 ~ 71702701 (+) True LOC118940657
XM_036950573.1 mRNA upstream 538754 71678583 ~ 71688655 (+) True LOC110493246
XM_036950582.1 mRNA downstream 225732 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA downstream 225735 72453362 ~ 72523767 (+) False LOC110494508
XM_036950581.1 mRNA downstream 225735 72453362 ~ 72523767 (+) True LOC110494508
XM_021569639.2 mRNA downstream 319525 72547152 ~ 72585158 (+) True LOC110494510
XM_021569640.2 mRNA downstream 359161 72586788 ~ 72600870 (+) False LOC110494511
TU1696516 other upstream 845137 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1046980 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1386179 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1571352 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 3228226 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 77096 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 226936 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 817110 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 895199 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1053633 73281260 ~ 73282019 (+) True G1485819

Expression Profile