RNA id: TU1697747



Basic Information


Item Value
RNA id TU1697747
length 690
RNA type TUCP
GC content 0.34
exon number 1
gene id G1484782
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72304723 ~ 72305412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taaccaaagcaatgcaacatcagaagcaaaaatcaaaatgtttctgacaaatggtttgataatgaatgtaaaacaattagaaaacacctaagacaaatgtcaaacaaaaaacataagcagcaaaacaacccagagctacgatatgaatactttgaaactctgaaacagtataaacaaacactgaaatgcaagaaattgaattataccaacaagacacttgttgaaattgaaaacgcaattgaccaaaatcagttctgggacatgtggaacaatttaagcacatcaaagccacaagaattagccatacaagatgtaggaatttggaaaacttactttgataatctatacaaaaacatcccacaaaaagacttacaacagaaccaattagaaattaaagaaaaattgaacatccttgaatcagtcattaaaaacaaccaaaatccattagattacccaataacccaacaagaactaaatgaaaagctaaaatctattaaatcaaaaaaggcttgtggtgtagacaacatcagaaatgaaatgctgaaaaacagcacacctgagttgcaaaatgctgtgcttaaattgttcaacatggttttaacttctggctgcttccctgatgtctggaaccaggggctcatctcccctatccacaaaagtggagacaaatcagaccccaataattacagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1697745 lncRNA upstream 4057 72300354 ~ 72300666 (+) True G1484780
TU1697733 lncRNA upstream 32108 72271792 ~ 72272615 (+) True G1484768
TU1697727 lncRNA upstream 37106 72267377 ~ 72267617 (+) True G1484762
TU1697673 lncRNA upstream 77096 72227409 ~ 72227627 (+) True G1484710
TU1697668 lncRNA upstream 79226 72225170 ~ 72225497 (+) True G1484705
TU1697748 lncRNA downstream 113 72305525 ~ 72305727 (+) True G1484783
TU1697754 lncRNA downstream 9711 72315123 ~ 72349495 (+) False G1484785
TU1697756 lncRNA downstream 9711 72315123 ~ 72324106 (+) True G1484785
TU1697763 lncRNA downstream 60974 72366386 ~ 72366940 (+) True G1484792
TU1697812 lncRNA downstream 66453 72371865 ~ 72372723 (+) False G1484829
XM_021569633.2 mRNA upstream 84649 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA upstream 84649 71979900 ~ 72220074 (+) False LOC110494505
XR_005037062.1 mRNA upstream 92569 71979900 ~ 72212154 (+) False LOC110494505
XR_005037244.1 mRNA upstream 602022 71702645 ~ 71702701 (+) True LOC118940657
XM_021567510.2 mRNA upstream 616068 71678389 ~ 71688655 (+) False LOC110493246
XM_036950582.1 mRNA downstream 147947 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA downstream 147950 72453362 ~ 72523767 (+) False LOC110494508
XM_036950581.1 mRNA downstream 147950 72453362 ~ 72523767 (+) True LOC110494508
XM_021569639.2 mRNA downstream 241740 72547152 ~ 72585158 (+) True LOC110494510
XM_021569640.2 mRNA downstream 281376 72586788 ~ 72600870 (+) False LOC110494511
TU1696516 other upstream 922451 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1124294 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1463493 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1648666 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 3305540 68994632 ~ 68999183 (+) True G1480254
TU1697884 other downstream 149151 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 739325 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 817414 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 975848 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1673478 73978890 ~ 73979435 (+) True G1486811

Expression Profile