RNA id: TU1697856


Basic Information

Item Value
RNA id TU1697856
length 245
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1484872
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72425316 ~ 72425560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttcccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaagtttatccctgatgtccttacacagctctctggtcttggccattgtggagaggttggagtctgtttgattgagtgtgtggacaggtgtcttttatacaggtaacgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697839 lncRNA upstream 20109 72404800 ~ 72405207 (+) True G1484855
TU1697812 lncRNA upstream 52593 72371865 ~ 72372723 (+) False G1484829
TU1697813 lncRNA upstream 52593 72371902 ~ 72372723 (+) True G1484829
TU1697811 lncRNA upstream 52628 72371902 ~ 72372688 (+) False G1484829
TU1697763 lncRNA upstream 58376 72366386 ~ 72366940 (+) True G1484792
TU1697870 lncRNA downstream 18948 72444508 ~ 72444723 (+) True G1484886
TU1697883 lncRNA downstream 28393 72453953 ~ 72454156 (+) True G1484896
TU1697936 lncRNA downstream 118601 72544161 ~ 72544443 (+) True G1484943
TU1697993 lncRNA downstream 234446 72660006 ~ 72675667 (+) True G1484985
TU1698014 lncRNA downstream 264084 72689644 ~ 72693477 (+) True G1485006
XM_021569633.2 mRNA upstream 205242 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA upstream 205242 71979900 ~ 72220074 (+) False LOC110494505
XR_005037062.1 mRNA upstream 213162 71979900 ~ 72212154 (+) False LOC110494505
XR_005037244.1 mRNA upstream 722615 71702645 ~ 71702701 (+) True LOC118940657
XM_036950573.1 mRNA upstream 736661 71678583 ~ 71688655 (+) True LOC110493246
XM_036950582.1 mRNA downstream 27799 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA downstream 27802 72453362 ~ 72523767 (+) False LOC110494508
XM_036950581.1 mRNA downstream 27802 72453362 ~ 72523767 (+) True LOC110494508
XM_021569639.2 mRNA downstream 121592 72547152 ~ 72585158 (+) True LOC110494510
XM_021569640.2 mRNA downstream 161228 72586788 ~ 72600870 (+) False LOC110494511
TU1697747 other upstream 119904 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1043044 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1244887 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1584086 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1769259 70650943 ~ 70656057 (+) True nampt2
TU1697884 other downstream 29003 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 619177 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 697266 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 855700 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1553330 73978890 ~ 73979435 (+) True G1486811

Expression Profile