RNA id: TU1697936


Basic Information

Item Value
RNA id TU1697936
length 283
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1484943
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72544161 ~ 72544443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaatataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtgg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697883 lncRNA upstream 90005 72453953 ~ 72454156 (+) True G1484896
TU1697870 lncRNA upstream 99438 72444508 ~ 72444723 (+) True G1484886
TU1697856 lncRNA upstream 118601 72425316 ~ 72425560 (+) True G1484872
TU1697839 lncRNA upstream 138954 72404800 ~ 72405207 (+) True G1484855
TU1697813 lncRNA upstream 171438 72371902 ~ 72372723 (+) True G1484829
TU1697993 lncRNA downstream 115563 72660006 ~ 72675667 (+) True G1484985
TU1698014 lncRNA downstream 145201 72689644 ~ 72693477 (+) True G1485006
TU1698076 lncRNA downstream 245628 72790071 ~ 72790719 (+) False G1485065
TU1698077 lncRNA downstream 245628 72790071 ~ 72790719 (+) False G1485065
TU1698078 lncRNA downstream 245628 72790071 ~ 72790947 (+) True G1485065
XM_036950582.1 mRNA upstream 20394 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA upstream 20394 72453362 ~ 72523767 (+) False LOC110494508
XM_036950581.1 mRNA upstream 20394 72453362 ~ 72523767 (+) True LOC110494508
XM_021569633.2 mRNA upstream 324087 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA upstream 324087 71979900 ~ 72220074 (+) False LOC110494505
XM_021569639.2 mRNA downstream 2709 72547152 ~ 72585158 (+) True LOC110494510
XM_021569640.2 mRNA downstream 42345 72586788 ~ 72600870 (+) False LOC110494511
XM_021569641.2 mRNA downstream 42345 72586788 ~ 72600870 (+) False LOC110494511
XR_005037065.1 mRNA downstream 42345 72586788 ~ 72621297 (+) True LOC110494511
XM_036950583.1 mRNA downstream 56882 72601325 ~ 72612798 (+) False LOC110494512
TU1697884 other upstream 89237 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 238749 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1161889 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1363732 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1702931 70839620 ~ 70841230 (+) True LOC110494494
TU1698249 other downstream 500294 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 578383 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 736817 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1434447 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1844093 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile