RNA id: TU1698014


Basic Information

Item Value
RNA id TU1698014
length 1266
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G1485006
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72689644 ~ 72693477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaacagagggatgaagagggtaaaacagagggatgaagaggataaaacagagggatgaagagggtaaaacagagggatgaagagggtaaaacagagggatgaagagggtaaaacagagggatgaagagggtaaaacagagggatgaagagggtaaaacagagggatgaagaggataaaacagagggatgaagagggtaaaacagagggatgaggagggtaaaacagagggatgatgagggtaaaacagagggatgaggagggtaaaacagagggatgaagagggtaaaacagagggatgaagagggtaaaacagagggatgaagaggataaaacagagggatgaagagggtaaaacagagggatgaagagaataaaacagagggatgaagagggtaaaacagagggatgaagagaataaaacagagggatgaagaggataaaacagagggatgaagagggtaaaacagagggatgaagagaataaaacagagggatgaagaggataaaacagagggatgaagaggataaaacagagggatgaagagggtaaAACATAGGGATGAAGAgggtaaaacagagggatgaagagggtaaaacagagggatgaagagaataaaacagagggatgaagaggataaaacagagggatgaagagggtaaaacagagggatgaagagaataaaacagagggatgaagaggataaaacagagggatgaagaggataaaacagagggtaaaacagagggatgaagaggataaaacagagggatgaagaagataaaacagagggatgaagagggtaaaacagagggatgaagagaataaaacagagggatgaagagggtaaaacagagggatgaagagggtaaaacagagggatgaagagaataaaacagagggatgaagaggataaAATAGAGGGATGAAGAAGATAAAACAGATTGATGAAGAGGGTAAAACATAGGGATGAAGAggataaaacagagggatgaagagggtaaaacagagggatgaagaggataaAACAGAGGGACGAAGAGtgtaaaacagagggatgaagagggtaaaacagagggatgaagaggatgaaacagagggatgaagagggtaaAACATAGGGATGAAGAGGATAAAACAGAGGGACGAAGAGtgtaaaacagagggatgaagaggataaaacagagggatgaagaggataaaacagagggatgaagaggataaaacagagggatgaagaggataaaacagagggatgaagagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697993 lncRNA upstream 13977 72660006 ~ 72675667 (+) True G1484985
TU1697936 lncRNA upstream 145201 72544161 ~ 72544443 (+) True G1484943
TU1697883 lncRNA upstream 235488 72453953 ~ 72454156 (+) True G1484896
TU1697870 lncRNA upstream 244921 72444508 ~ 72444723 (+) True G1484886
TU1697856 lncRNA upstream 264084 72425316 ~ 72425560 (+) True G1484872
TU1698076 lncRNA downstream 96594 72790071 ~ 72790719 (+) False G1485065
TU1698077 lncRNA downstream 96594 72790071 ~ 72790719 (+) False G1485065
TU1698078 lncRNA downstream 96594 72790071 ~ 72790947 (+) True G1485065
TU1698083 lncRNA downstream 104418 72797895 ~ 72798215 (+) True G1485070
TU1698032 lncRNA downstream 153392 72846869 ~ 72852122 (+) True G1485023
XM_036950584.1 mRNA upstream 50547 72630322 ~ 72639097 (+) True LOC110494513
XR_005037065.1 mRNA upstream 68347 72586788 ~ 72621297 (+) True LOC110494511
XM_021569648.2 mRNA downstream 124691 72818168 ~ 72828562 (+) True LOC110494516
XM_036950594.1 mRNA downstream 168882 72862359 ~ 72864606 (+) False LOC110494520
XM_021569653.2 mRNA downstream 168887 72862364 ~ 72864606 (+) False LOC110494520
XM_021569654.2 mRNA downstream 169061 72862538 ~ 72864606 (+) False LOC110494520
XM_036950597.1 mRNA downstream 169069 72862546 ~ 72864606 (+) True LOC110494520
TU1697884 other upstream 234720 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 384232 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1307372 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1509215 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1848414 70839620 ~ 70841230 (+) True LOC110494494
TU1698249 other downstream 351260 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 429349 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 587783 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1285413 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1695059 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile