RNA id: TU1698032



Basic Information


Item Value
RNA id TU1698032
length 263
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G1485023
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72846869 ~ 72852122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gTCGTCATCTTCAAAGTTGTTTCTGTTGGGGGCATCGTTCTTAGGATTACGGGGAATGTCCTGTGGATCCTCACTTAACTCGTACTCCTGGACTTTGGGCTGTAGATTTTTGGATTTGGGTCGCCCAGGACCAGGCCCGTGACTACCCTTTCCATCGAGTTTCTGCTTCTTAGGTTTGTGACGTGATGAGGCTGAAAGGTCTGCATCCTTTCCCAGCTTCAGAAAGCGCTTGTCCCCTTTCTTATCCTGCCAGTCTGTGAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1698083 lncRNA upstream 48654 72797895 ~ 72798215 (+) True G1485070
TU1698078 lncRNA upstream 55922 72790071 ~ 72790947 (+) True G1485065
TU1698076 lncRNA upstream 56150 72790071 ~ 72790719 (+) False G1485065
TU1698077 lncRNA upstream 56150 72790071 ~ 72790719 (+) False G1485065
TU1698014 lncRNA upstream 153392 72689644 ~ 72693477 (+) True G1485006
TU1698228 lncRNA downstream 170993 73023115 ~ 73036053 (+) True G1485196
TU1698266 lncRNA downstream 235580 73087702 ~ 73087929 (+) True G1485233
TU1698271 lncRNA downstream 242462 73094584 ~ 73094800 (+) True G1485238
TU1698295 lncRNA downstream 267265 73119387 ~ 73119600 (+) True G1485257
TU1698296 lncRNA downstream 267717 73119839 ~ 73120040 (+) True G1485258
XM_021569648.2 mRNA upstream 18307 72818168 ~ 72828562 (+) True LOC110494516
XM_036950584.1 mRNA upstream 207772 72630322 ~ 72639097 (+) True LOC110494513
XR_005037065.1 mRNA upstream 225572 72586788 ~ 72621297 (+) True LOC110494511
XM_036950594.1 mRNA downstream 10237 72862359 ~ 72864606 (+) False LOC110494520
XM_021569653.2 mRNA downstream 10242 72862364 ~ 72864606 (+) False LOC110494520
XM_021569654.2 mRNA downstream 10416 72862538 ~ 72864606 (+) False LOC110494520
XM_036950597.1 mRNA downstream 10424 72862546 ~ 72864606 (+) True LOC110494520
XM_021569661.2 mRNA downstream 192224 73044346 ~ 73048491 (+) False LOC110494525
TU1697884 other upstream 391945 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 541457 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1464597 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1666440 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 2005639 70839620 ~ 70841230 (+) True LOC110494494
TU1698249 other downstream 192615 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 270704 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 429138 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1126768 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1536414 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile