RNA id: TU1698271



Basic Information


Item Value
RNA id TU1698271
length 217
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1485238
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73094584 ~ 73094800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tatttacataagtattcagaccctttgctatgagactcgaaattgagctcaggtgcatcctgtttccattgatcaaccttgatatgtttctacgacttgattggagtatacctgtggtaaattcaattgattggacatgatttggaaaggaacacacgtctatataaggtcccacagttgacagtgcatgtcagagcaaaaaccaagccatgaggtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1698266 lncRNA upstream 6655 73087702 ~ 73087929 (+) True G1485233
TU1698228 lncRNA upstream 58531 73023115 ~ 73036053 (+) True G1485196
TU1698032 lncRNA upstream 242462 72846869 ~ 72852122 (+) True G1485023
TU1698083 lncRNA upstream 296369 72797895 ~ 72798215 (+) True G1485070
TU1698078 lncRNA upstream 303637 72790071 ~ 72790947 (+) True G1485065
TU1698295 lncRNA downstream 24587 73119387 ~ 73119600 (+) True G1485257
TU1698296 lncRNA downstream 25039 73119839 ~ 73120040 (+) True G1485258
TU1698884 lncRNA downstream 147913 73242713 ~ 73249014 (+) True G1485782
TU1698885 lncRNA downstream 148278 73243078 ~ 73248917 (+) True G1485783
TU1698903 lncRNA downstream 167699 73262499 ~ 73263014 (+) True G1485801
XM_021569660.2 mRNA upstream 44626 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 44626 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 46093 73044346 ~ 73048491 (+) False LOC110494525
XM_021569654.2 mRNA upstream 229978 72862538 ~ 72864606 (+) False LOC110494520
XM_021569672.2 mRNA downstream 272002 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 300940 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 300940 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 349950 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 349950 73444750 ~ 73457632 (+) False taf4a
TU1698249 other upstream 48996 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 639660 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 789172 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1712312 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1914155 71178513 ~ 71180429 (+) True G1483346
TU1698303 other downstream 28026 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 186460 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 884090 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1293736 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3588799 76683599 ~ 76684020 (+) True G1490016

Expression Profile