RNA id: TU1698295



Basic Information


Item Value
RNA id TU1698295
length 214
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1485257
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73119387 ~ 73119600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTCATACATTTAACAAGACACCAACATACACTTTACAAAACAGTCAGTGACCAAATTACTGACTGTCTGTGACCTATGGAGGGAATGATGATTGGCAGTTAAAATGTTGGACTAtcagaggtatggagggagagttaTTGCTGTTCCTGGCAGTGTCACTCCTTGGTTTAGAATTGATGGTGCACAAATAAAGCCATAGTGTCCCTCCAGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1698271 lncRNA upstream 24587 73094584 ~ 73094800 (+) True G1485238
TU1698266 lncRNA upstream 31458 73087702 ~ 73087929 (+) True G1485233
TU1698228 lncRNA upstream 83334 73023115 ~ 73036053 (+) True G1485196
TU1698032 lncRNA upstream 267265 72846869 ~ 72852122 (+) True G1485023
TU1698083 lncRNA upstream 321172 72797895 ~ 72798215 (+) True G1485070
TU1698296 lncRNA downstream 239 73119839 ~ 73120040 (+) True G1485258
TU1698884 lncRNA downstream 123113 73242713 ~ 73249014 (+) True G1485782
TU1698885 lncRNA downstream 123478 73243078 ~ 73248917 (+) True G1485783
TU1698903 lncRNA downstream 142899 73262499 ~ 73263014 (+) True G1485801
TU1698913 lncRNA downstream 151795 73271395 ~ 73271657 (+) True G1485811
XM_021569660.2 mRNA upstream 69429 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 69429 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 70896 73044346 ~ 73048491 (+) False LOC110494525
XM_021569654.2 mRNA upstream 254781 72862538 ~ 72864606 (+) False LOC110494520
XM_021569672.2 mRNA downstream 247202 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 276140 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 276140 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 325150 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 325150 73444750 ~ 73457632 (+) False taf4a
TU1698249 other upstream 73799 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 664463 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 813975 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1737115 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1938958 71178513 ~ 71180429 (+) True G1483346
TU1698303 other downstream 3226 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 161660 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 859290 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1268936 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3563999 76683599 ~ 76684020 (+) True G1490016

Expression Profile