RNA id: TU1698303


Basic Information

Item Value
RNA id TU1698303
length 2508
RNA type TUCP
GC content 0.46
exon number 2
gene id G1485260
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73122826 ~ 73125356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcattcaaggttttattttattttaactattttctacattgtagaataatagtgaagacagcaaaacaatgaaataacacatggaatcatgtagtaaccaaaaaagtgtttatatttgagattcttcaatgtagctaccctttgccttgacaaccgctttgcacactcttggcattctcacaaccagcttcatgaagtagtcacctggaatgcatttcaattaacaggtgtgctctgttaaaagttcatttgtggaatttctttccttcttaatgcgtttgagccaatcagttgtgttgtgacaaagtaggggtggtatacagaagacagccctatttggtaaaagacaaagtccatattatggcaagaacagctcaaataagcaaagggaaacagTAAATccttacttgaagacatgaaggtcagtcaatgcagaaaatgtcaagaccttttaaagtttcttcaagtgcagtcgcaaaaaccatcaagcactatgatgaaactggctctcatgaggaccaccacaagaaaggatgacacagagttacctctgctgcagaggataagttcatttgatagttaccagactcagattgcagcccaaataaatgcttcacagagttcaagtaacagacacatctcaacagcaaCTGCTCAGAGaacactgtgtgaatcaggccttcatggttgaatttctgcaaagaaatcactactaaaggacaccaataataagaagagacttgcttgggccaagaaaaacttgagtccaaatttgagatccTCGTTCCAACCAGTAGGTGAATGGATGGGGTGATCTCTGCAGCAAGTGtggttcaaggcacacttaaccagcatggctaccacagcattctgaagtgATATCCCATCTGGGTTgagcttaatgggactatcatttgtttttcaacaggacactgAACCAAAAAACACTTCCAAGCTCtggaagggctatttgaccaaggagagtgatggagtgctgcatcagatgacctggtctccacaatcacctgacctcaacccaattaaaataaaatgttattgttcacacacgtgattagcagatgttattgcaggtgtagcgaatttgcagtaatatctaacaagtaatatcaaactaattacacaacatatacccaatacacacaaatctaagtaggaatgaagtAAGACTATATacattgctcaaaaaaataaagggaagacttaaacaacacaatgttgtTGCAAtgcaagtcaatcacacttctgtgaaatcaaaatgtccacttaggaagcaacactgattgacaatacatttcacatgctgttgtgcaaatggaatagacaacaggtggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtggtgaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcacttttgaatgctggcggtgctttcactctagtggtagcatgagacggagtctacaacccacacaagtggctcaggtagtgcagctcatccaggatggcacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagacgtggaggaggccgtaggagggcaacaacccagaggcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagcactgccagagccctgcaaaatgacctccggcaggccacaaatgtgcatgtgtctactcaaacggtcagaaacagactccatgagggtggtaatgagggcccgacgtccacaggtgggggttgtgcttacagcccaacaccgtgcaggacgtttggcatttgccagagaacaccaagattggcaaattcgccactggcgcactgtgctcttcacagatgaaagcaggttcacactgagcatgtgacagacgtgacagtctggagacgccgtggagaacgttctactgcctgcaacatcctccagcatgaccggtttggctgtgggtcagtcatggtgtggggtggcatttctttggggggctgcacagtcCTCCAtctgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctccttgtgagaccatatgctggtgcggttggccctgggttcctcctaatgcaagacaatgctagacctcacgtgtctggagtgtgtcagcagttcctgcaagaggaaggcattgatgctatggaccgcccgttccacagacctgaatccaattgagcacatctgggacatcatgtctcgctccatccaccaacgccacgttgcaccacagactgtccaggagttggcggatgctttagtccaggtttgggagatccctcaggagaccatccaccacctcatcaggagcatgcccaggcgttgtagggaggtcatacaggcacgtggaggccacacacactactgaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698296 lncRNA upstream 2786 73119839 ~ 73120040 (+) True G1485258
TU1698295 lncRNA upstream 3226 73119387 ~ 73119600 (+) True G1485257
TU1698271 lncRNA upstream 28026 73094584 ~ 73094800 (+) True G1485238
TU1698266 lncRNA upstream 34897 73087702 ~ 73087929 (+) True G1485233
TU1698228 lncRNA upstream 86773 73023115 ~ 73036053 (+) True G1485196
TU1698884 lncRNA downstream 117357 73242713 ~ 73249014 (+) True G1485782
TU1698885 lncRNA downstream 117722 73243078 ~ 73248917 (+) True G1485783
TU1698903 lncRNA downstream 137143 73262499 ~ 73263014 (+) True G1485801
TU1698913 lncRNA downstream 146039 73271395 ~ 73271657 (+) True G1485811
TU1698917 lncRNA downstream 148795 73274151 ~ 73274429 (+) True G1485815
XM_021569660.2 mRNA upstream 72868 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 72868 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 74335 73044346 ~ 73048491 (+) False LOC110494525
XM_036950594.1 mRNA upstream 258220 72862359 ~ 72864606 (+) False LOC110494520
XM_021569653.2 mRNA upstream 258220 72862364 ~ 72864606 (+) False LOC110494520
XM_021569672.2 mRNA downstream 241446 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 270384 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 270384 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 319394 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 319394 73444750 ~ 73457632 (+) False taf4a
TU1698249 other upstream 77238 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 667902 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 817414 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1740554 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1942397 71178513 ~ 71180429 (+) True G1483346
TU1698921 other downstream 155904 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 853534 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1263180 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3558243 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4882934 78008290 ~ 78008799 (+) True G1491886

Expression Profile