RNA id: TU1698903



Basic Information


Item Value
RNA id TU1698903
length 516
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G1485801
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73262499 ~ 73263014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATCCAGATGTTGTGGATGCCGTCTGTGTCTAGCTGTGGATTGACATCACGAAGCTTCCGCAACATAGCTTGACAGCTGTTCAAATAGTGAAaagtctcctctatctctacaccatcactgagagagagggagagagtgaaaagtGCCACTGAGATACACTGACAAAGAGATGCGTGTACTGACATGACAGAGACACATAATGATCATACTATATGGAGTACTCACTGGACAACCAGGTAGTAATTGTGGATGAACTCCAGCCACTCTTGTTCTGTTAGGGATGGTGGTGTTTCCAAGGCAATGTCTATGTCATTGTGTTCCAAGCTGTCCAGGAAGTCCTGGCAAACTTTTAGTGCACTGTCAATCATTCTGGAGGCCACCAATGACATGGCTCGACGCTTGCATGCTTTTTTCTGACCTAAGGGATTGGACAAGACAATGAAGCCTGTAGCTCTGTTTGACCTAAATCGGGGGGATTGAGGGGGTAGGCCTCTTTTTGTGAGGAATACCTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1698884 lncRNA upstream 13485 73242713 ~ 73249014 (+) True G1485782
TU1698885 lncRNA upstream 13582 73243078 ~ 73248917 (+) True G1485783
TU1698296 lncRNA upstream 142459 73119839 ~ 73120040 (+) True G1485258
TU1698295 lncRNA upstream 142899 73119387 ~ 73119600 (+) True G1485257
TU1698271 lncRNA upstream 167699 73094584 ~ 73094800 (+) True G1485238
TU1698913 lncRNA downstream 8381 73271395 ~ 73271657 (+) True G1485811
TU1698917 lncRNA downstream 11137 73274151 ~ 73274429 (+) True G1485815
TU1698923 lncRNA downstream 21899 73284913 ~ 73285159 (+) True G1485821
TU1698929 lncRNA downstream 31586 73294600 ~ 73294822 (+) True G1485827
TU1698930 lncRNA downstream 31942 73294956 ~ 73295164 (+) True G1485828
XM_021569660.2 mRNA upstream 212541 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 212541 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 214008 73044346 ~ 73048491 (+) False LOC110494525
XM_021569654.2 mRNA upstream 397893 72862538 ~ 72864606 (+) False LOC110494520
XM_021569672.2 mRNA downstream 103788 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 132726 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 132726 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 181736 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 181736 73444750 ~ 73457632 (+) False taf4a
TU1698303 other upstream 137143 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 216911 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 807575 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 957087 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1880227 71381944 ~ 71382272 (+) True G1483638
TU1698921 other downstream 18246 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 715876 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1125522 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3420585 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4745276 78008290 ~ 78008799 (+) True G1491886

Expression Profile