RNA id: TU1698921



Basic Information


Item Value
RNA id TU1698921
length 760
RNA type TUCP
GC content 0.53
exon number 1
gene id G1485819
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73281260 ~ 73282019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctggttcactccagacctgactgccctcgaccagcacaaaaacatcctgtggcggactgcgctaacatcgaatagtccccgcgatatgcaactgttcagggaagtcaggaaccaatacacacagtcagtcaggaaagctaaagccaacttcttcaggcagaagtttgcatcctgtagctccaactccaaaaagttctgggacactgtgaagtccatggagaacaagagcacctcctcccagctgcccactgcactgaggctaggtaacatggtcaccaccgataaatccatgattatcgaaaacttcaacaagcatttctcaacggctggccatgccttccgcctggctactccaacctcggacaacagctcccccccccccggagctactcgcccaagcctctccaggttctcctttacccaaatccagatagcagatgttctgaaagagctgcaaaacctggacccgtacaaatcagctgggctggacaatctggaccctctattcctgaaactatccgccgccattgtcgcaacccctattaccagcctgttcaacctctctttcatatcgtctgagatccccaaggattggaaagctgccgcagtcatccccctcttcaaagggggcgacaccctggacccaaactgttacagacctatatccatcctgccctgcctatctaaggtcttcgaaagccaagtcaacaaacaggtcactgaccatcttgaatcccaccgtaccttctccgctgtgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1698917 lncRNA upstream 6831 73274151 ~ 73274429 (+) True G1485815
TU1698913 lncRNA upstream 9603 73271395 ~ 73271657 (+) True G1485811
TU1698903 lncRNA upstream 18246 73262499 ~ 73263014 (+) True G1485801
TU1698884 lncRNA upstream 32246 73242713 ~ 73249014 (+) True G1485782
TU1698885 lncRNA upstream 32343 73243078 ~ 73248917 (+) True G1485783
TU1698923 lncRNA downstream 2894 73284913 ~ 73285159 (+) True G1485821
TU1698929 lncRNA downstream 12581 73294600 ~ 73294822 (+) True G1485827
TU1698930 lncRNA downstream 12937 73294956 ~ 73295164 (+) True G1485828
TU1698952 lncRNA downstream 38089 73320108 ~ 73322377 (+) False G1485848
TU1698953 lncRNA downstream 38089 73320108 ~ 73325594 (+) True G1485848
XM_021569660.2 mRNA upstream 231302 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 231302 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 232769 73044346 ~ 73048491 (+) False LOC110494525
XM_021569654.2 mRNA upstream 416654 72862538 ~ 72864606 (+) False LOC110494520
XM_021569672.2 mRNA downstream 84783 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 113721 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 113721 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 162731 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 162731 73444750 ~ 73457632 (+) False taf4a
TU1698303 other upstream 155904 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 235672 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 826336 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 975848 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1898988 71381944 ~ 71382272 (+) True G1483638
TU1699979 other downstream 696871 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1106517 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3401580 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4726271 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4736349 78018368 ~ 78019816 (+) True G1491899

Expression Profile