RNA id: TU1698953


Basic Information

Item Value
RNA id TU1698953
length 1709
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1485848
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73320108 ~ 73325594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttggTATGGCTTCTTTGAAGGGACTGGAAATGACATCTTTCTGAAAGTAACAGAGTCTGATCCCAGCCAGCAGCCGGAGAAACTAAAGCATCTAGAGTTGTGCATACAGGAAAACCCAATGGGTTCCCAGGAAAAATGGAAAAGAGAATGTCCATCAAATGAATAAAGACACATTTGTGGATTTGCACATACACTTACCAAGTTATAGGACTTCAGTGCTGCAACTATTTGGACCAAGTTACAAAAAATGATTAACTTAGAATTTCCTATAAATACCTAAACATAAATATAGTATAATAAATGTACTTGATAATGGAAACATTTAAAAATACTGTACATGAATGTCCTTTGAGAGATCAACATTTGACAATCTTAGATGAACAGTTAGACTAAATAAACAGGTAGTGGGTATCGTTGTCAGCTACCTTGCACGTCAACGCCCAATGCTCTTTGACCCCTCCTCCCACTTCCTGCATATGACGATCTACTTCGGTCTCCAATAATCAAGACAAAGTGTGCCAATAGACTAGAAGAGTGTCTGGTATAAATATGAAGAGCCCAGGCCATGTGAAAATGAGTAAGGACTCTCCCTGTTAGCTCTGAGTTAAGGGGTTAAAAGGAAGTGTTGTAAAAACAGGAGTTAAGGCCTCTTTAATAAAAAAGAAATGTAGTCCTGACTTTAACAATTTCACAGTCTCGGAGAAGGGGGGGATCCCAGAATCTCCGCTCTCCATTTAGTCCTTGATGACCTCTGAAAGGCTCAGAGAGAACCACGACCACTCATGGTGTAGGACCAGTAACACCGGGGGTGTATCAGACAGCTGAGTCCTCGCCTCTGGTGTGGATGGAAACAGTTGGCACTGTGCCTCTCACCCAATGCCCAACCACTATGTATCCAAGCAGCAGTGCCTTCACTTAACCCATGCCCTGGCAAAGACGAGGGGGATGAGGGGTCAATGTCCaggtaagcccccccccccccttcgctCTCTTCAAATACAAGTATGTAGCGTTTTTTGTTGAAACAAAATATAATAATTACATTGATAATAagatactaacactgatacaatAAAGAGAcagtaataataaaaaaaaatcaagtgTCTGCATCTGGAAGCCCTCAGTGACCACACGTTTAATTCTAGCCTCCCATCCGGTCATCAAAACCCTCCCAAGACCCATGAGGGGGCTCATCCTGATGGTACCATGCAATAGTCCTTCAGCCCATTCCCTGAAAGCCCTGGCTGAGGCATGGGCAGTCCAGGGTGACACCCCAGGCCTATAGGACTCCTTGCATCCTGCCTCTCCTCACTGCATGCGGTCTGGCTGAACGTGCTGCTGGGGGGCGTACTGCAGGAAGGCGGCGTAGGGGTAATGCTCGAATGCGGCCTGGGCGTACTGGGTGTAAGCAGCACTGTAGTCCAGGTAGGGGGAGCTGACGGAGGAGGACACCTGAGAAGGGAGCACCAGGCTAGGCTGAAGGTAGGCCTGGGGGTACACATACTGCTGGGCCAACCCATACTGCCTCTGGATGAGCCCTGGGTGAATAGGCTGCACTCCAATGGAAATGCCTGGAAGAACGAGAAAACGACCCGTCAGACATTTGCAATGCATAGGAGGCAGCGAGACTAGAACAGTGTGTAACTCAAGCAACATACTAATGATATAGAACACATGCAGAGATGGCAAATTACACAGGTGTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698930 lncRNA upstream 24944 73294956 ~ 73295164 (+) True G1485828
TU1698929 lncRNA upstream 25286 73294600 ~ 73294822 (+) True G1485827
TU1698923 lncRNA upstream 34949 73284913 ~ 73285159 (+) True G1485821
TU1698917 lncRNA upstream 45679 73274151 ~ 73274429 (+) True G1485815
TU1698913 lncRNA upstream 48451 73271395 ~ 73271657 (+) True G1485811
TU1698946 lncRNA downstream 57013 73382607 ~ 73384142 (+) True LOC110494536
TU1698945 lncRNA downstream 94190 73419784 ~ 73420295 (+) True G1485841
TU1698944 lncRNA downstream 94820 73420414 ~ 73421285 (+) True G1485840
TU1699003 lncRNA downstream 104776 73430370 ~ 73430937 (+) True G1485897
TU1699004 lncRNA downstream 105359 73430953 ~ 73431204 (+) True G1485898
XM_021569660.2 mRNA upstream 270150 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 270150 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 271617 73044346 ~ 73048491 (+) False LOC110494525
XM_021569654.2 mRNA upstream 455502 72862538 ~ 72864606 (+) False LOC110494520
XM_021569672.2 mRNA downstream 41208 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 70146 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 70146 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 119156 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 119156 73444750 ~ 73457632 (+) False taf4a
TU1698921 other upstream 38089 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 194752 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 274520 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 865184 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1014696 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 653296 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1062942 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3358005 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4682696 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4692774 78018368 ~ 78019816 (+) True G1491899

Expression Profile