RNA id: TU1699009



Basic Information


Item Value
RNA id TU1699009
length 273
lncRNA type intronic
GC content 0.58
exon number 1
gene id G1485903
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73438001 ~ 73438273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCGGAGCAGCAGTGGGCCTAAGAGATGCGTCTGTACAGGCCCACCTCTGTGTGGACACATCCTGGCAGCCATCAACCACTGTCCCGCTGCCTTGTGGGTTAGTCTGGTACGACAAAGGCTAGGGGAGGCACCCTGAGAGAAAAGCAGCGTGCTGGCAGCGCGTGGTAGGTGCGCCGCTACCTCGGCATTGGCTACAGAGGTAGGAAACATCAGGACTGGTTCGATGAGAACGCTGACACCATCACAACATTACTGGACAATATGCACAGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1699004 lncRNA upstream 6797 73430953 ~ 73431204 (+) True G1485898
TU1699003 lncRNA upstream 7064 73430370 ~ 73430937 (+) True G1485897
TU1698944 lncRNA upstream 16716 73420414 ~ 73421285 (+) True G1485840
TU1698945 lncRNA upstream 17706 73419784 ~ 73420295 (+) True G1485841
TU1698946 lncRNA upstream 53859 73382607 ~ 73384142 (+) True LOC110494536
TU1699013 lncRNA downstream 2782 73441055 ~ 73441907 (+) True G1485907
TU1699203 lncRNA downstream 22442 73460715 ~ 73460920 (+) True G1486085
TU1699223 lncRNA downstream 35463 73473736 ~ 73474399 (+) True G1486105
TU1699224 lncRNA downstream 36381 73474654 ~ 73474915 (+) True G1486106
TU1699340 lncRNA downstream 225169 73663442 ~ 73663848 (+) True G1486221
XM_021569673.2 mRNA upstream 21314 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA upstream 21314 73395740 ~ 73416687 (+) True LOC110494537
XM_021569672.2 mRNA upstream 53622 73366802 ~ 73384379 (+) False LOC110494536
XM_021569660.2 mRNA upstream 388043 73044346 ~ 73049958 (+) False LOC110494525
XM_021569675.2 mRNA downstream 6477 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 6477 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA downstream 6477 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA downstream 6477 73444750 ~ 73457632 (+) True taf4a
XM_021569681.2 mRNA downstream 617902 74056175 ~ 74066815 (+) False LOC110494542
TU1698921 other upstream 155982 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 312645 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 392413 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 983077 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1132589 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 540617 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 950263 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3245326 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4570017 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4580095 78018368 ~ 78019816 (+) True G1491899

Expression Profile