RNA id: TU1699224



Basic Information


Item Value
RNA id TU1699224
length 262
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G1486106
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73474654 ~ 73474915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcaaccctagatgTGAGTCACCATGCACTGCAAATAAAAGTATTCTGTATTATATAGAAGGATTCCTTATTACATAGAAGGCTTGAATATTTAATCTCCTTAATGCCAGGCTTCCTTCTCAAGTGTAGAGATTAACTGTGGAATCAAAGCACACCTCATTGTCAGCCACAGTATGTAGCATGCTCCCAAAGCCTATcagcacagctctctctctctctctctctagtaacaaGAGTTGGGTCTGAGTGAACCTGGGtcaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1699223 lncRNA upstream 255 73473736 ~ 73474399 (+) True G1486105
TU1699203 lncRNA upstream 13734 73460715 ~ 73460920 (+) True G1486085
TU1699013 lncRNA upstream 32747 73441055 ~ 73441907 (+) True G1485907
TU1699009 lncRNA upstream 36381 73438001 ~ 73438273 (+) True G1485903
TU1699004 lncRNA upstream 43450 73430953 ~ 73431204 (+) True G1485898
TU1699340 lncRNA downstream 188527 73663442 ~ 73663848 (+) True G1486221
TU1699345 lncRNA downstream 194156 73669071 ~ 73671902 (+) True G1486225
TU1699464 lncRNA downstream 357281 73832196 ~ 73858579 (+) True G1486338
TU1699920 lncRNA downstream 462712 73937627 ~ 73937832 (+) True G1486752
TU1699922 lncRNA downstream 463254 73938169 ~ 73938388 (+) True G1486754
XM_021569675.2 mRNA upstream 17022 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA upstream 17022 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA upstream 17022 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA upstream 17022 73444750 ~ 73457632 (+) True taf4a
XM_021569674.2 mRNA upstream 57967 73395740 ~ 73416687 (+) True LOC110494537
XM_021569681.2 mRNA downstream 581260 74056175 ~ 74066815 (+) False LOC110494542
XM_036950602.1 mRNA downstream 581260 74056175 ~ 74066815 (+) False LOC110494542
XM_036950604.1 mRNA downstream 581260 74056175 ~ 74066815 (+) False LOC110494542
XM_036950605.1 mRNA downstream 581260 74056175 ~ 74066815 (+) True LOC110494542
XM_036950607.1 mRNA downstream 595146 74070061 ~ 74084580 (+) False LOC110494543
TU1698921 other upstream 192635 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 349298 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 429066 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1019730 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1169242 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 503975 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 913621 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3208684 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4533375 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4543453 78018368 ~ 78019816 (+) True G1491899

Expression Profile