RNA id: TU1699340



Basic Information


Item Value
RNA id TU1699340
length 313
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1486221
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73663442 ~ 73663848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tacaaaataacaaacgtggcaaaaacccgaaacagtcctatctggtgcagagaacacaaagacaggaaacaaccacccacaaaccccaacacaaaacaagctacctaaatatggttcccaatcagagacaatgactaacacctgcctctgattgagaaccatatcaggccatacatagaaacggacaaactaaacacacaacatagaatgcccacccagctcacgtcaccaacactaaaacaaggaaaacacaacagaactatggtcagaacgtgacaatgcagaagatacatctccttcaaatgttgatatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1699224 lncRNA upstream 188527 73474654 ~ 73474915 (+) True G1486106
TU1699223 lncRNA upstream 189043 73473736 ~ 73474399 (+) True G1486105
TU1699203 lncRNA upstream 202522 73460715 ~ 73460920 (+) True G1486085
TU1699013 lncRNA upstream 221535 73441055 ~ 73441907 (+) True G1485907
TU1699009 lncRNA upstream 225169 73438001 ~ 73438273 (+) True G1485903
TU1699345 lncRNA downstream 5223 73669071 ~ 73671902 (+) True G1486225
TU1699464 lncRNA downstream 168348 73832196 ~ 73858579 (+) True G1486338
TU1699920 lncRNA downstream 273779 73937627 ~ 73937832 (+) True G1486752
TU1699922 lncRNA downstream 274321 73938169 ~ 73938388 (+) True G1486754
TU1699941 lncRNA downstream 288472 73952320 ~ 73952630 (+) True G1486773
XM_021569675.2 mRNA upstream 205810 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA upstream 205810 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA upstream 205810 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA upstream 205810 73444750 ~ 73457632 (+) True taf4a
XM_021569674.2 mRNA upstream 246755 73395740 ~ 73416687 (+) True LOC110494537
XM_021569681.2 mRNA downstream 392327 74056175 ~ 74066815 (+) False LOC110494542
XM_036950602.1 mRNA downstream 392327 74056175 ~ 74066815 (+) False LOC110494542
XM_036950604.1 mRNA downstream 392327 74056175 ~ 74066815 (+) False LOC110494542
XM_036950605.1 mRNA downstream 392327 74056175 ~ 74066815 (+) True LOC110494542
XM_036950607.1 mRNA downstream 406213 74070061 ~ 74084580 (+) False LOC110494543
TU1698921 other upstream 381423 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 538086 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 617854 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1208518 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1358030 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 315042 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 724688 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3019751 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4344442 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4354520 78018368 ~ 78019816 (+) True G1491899

Expression Profile