RNA id: TU1699967



Basic Information


Item Value
RNA id TU1699967
length 257
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1486799
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73968194 ~ 73968450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctagaggtgaaaataactacaatttagcattaatactggagtgatagatgtgcagatgatggggtgcaaaagagcaagagggtaagtaataatatggggatgaggtagtcgggtgtgctatttacagattggctgtgtacaggtacagtgatcggtaagctgctcagacagctgatgcttaaaattaGAGGGAGATAATACGGTTCTAAAAATGTCATATGTTTTCGTTTGTGTCGGTGGTTGTTCGTCTTATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1699941 lncRNA upstream 15564 73952320 ~ 73952630 (+) True G1486773
TU1699922 lncRNA upstream 29806 73938169 ~ 73938388 (+) True G1486754
TU1699920 lncRNA upstream 30362 73937627 ~ 73937832 (+) True G1486752
TU1699464 lncRNA upstream 109615 73832196 ~ 73858579 (+) True G1486338
TU1699345 lncRNA upstream 296292 73669071 ~ 73671902 (+) True G1486225
TU1699980 lncRNA downstream 11235 73979685 ~ 73979899 (+) True G1486812
TU1699982 lncRNA downstream 11913 73980363 ~ 73981268 (+) True G1486814
TU1699983 lncRNA downstream 12853 73981303 ~ 73981618 (+) True G1486815
TU1699986 lncRNA downstream 13204 73981654 ~ 73981942 (+) True G1486818
TU1699990 lncRNA downstream 17905 73986355 ~ 73987148 (+) True G1486822
XM_021569675.2 mRNA upstream 510562 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA upstream 510562 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA upstream 510562 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA upstream 510562 73444750 ~ 73457632 (+) True taf4a
XM_021569674.2 mRNA upstream 551507 73395740 ~ 73416687 (+) True LOC110494537
XM_021569681.2 mRNA downstream 87725 74056175 ~ 74066815 (+) False LOC110494542
XM_036950602.1 mRNA downstream 87725 74056175 ~ 74066815 (+) False LOC110494542
XM_036950604.1 mRNA downstream 87725 74056175 ~ 74066815 (+) False LOC110494542
XM_036950605.1 mRNA downstream 87725 74056175 ~ 74066815 (+) True LOC110494542
XM_036950607.1 mRNA downstream 101611 74070061 ~ 74084580 (+) False LOC110494543
TU1698921 other upstream 686175 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 842838 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 922606 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1513270 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1662782 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 10440 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 420086 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 2715149 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4039840 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4049918 78018368 ~ 78019816 (+) True G1491899

Expression Profile