RNA id: TU1699986



Basic Information


Item Value
RNA id TU1699986
length 289
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1486818
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73981654 ~ 73981942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtataaggtagttgttttgGAATtgctaggttagattactcattggttattactgcattgtcggaactagaagcacaagcattttgctacactcgcattaacagctgctaaccatgtgtatgtgacaaatcaaatttgatttctTATGTCTCGGCCCATAAGCATTAGGTTCTCTGtgtcaaaacctgtttttgatgtGCTATAAATTCCCTCATTTCAACCTGATTTCATGTCTTTGCAAAGAATGGGAGAGGAGATACTGTGCAAACACAGGGGACTAATATACATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1699983 lncRNA upstream 36 73981303 ~ 73981618 (+) True G1486815
TU1699982 lncRNA upstream 386 73980363 ~ 73981268 (+) True G1486814
TU1699980 lncRNA upstream 1755 73979685 ~ 73979899 (+) True G1486812
TU1699967 lncRNA upstream 13204 73968194 ~ 73968450 (+) True G1486799
TU1699941 lncRNA upstream 29024 73952320 ~ 73952630 (+) True G1486773
TU1699990 lncRNA downstream 4413 73986355 ~ 73987148 (+) True G1486822
TU1700052 lncRNA downstream 52377 74034319 ~ 74081450 (+) True G1486869
TU1700118 lncRNA downstream 163510 74145452 ~ 74145667 (+) True G1486928
TU1700128 lncRNA downstream 203595 74185537 ~ 74185740 (+) True G1486938
TU1700320 lncRNA downstream 252018 74233960 ~ 74234247 (+) True G1487100
XM_021569675.2 mRNA upstream 524022 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA upstream 524022 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA upstream 524022 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA upstream 524022 73444750 ~ 73457632 (+) True taf4a
XM_021569674.2 mRNA upstream 564967 73395740 ~ 73416687 (+) True LOC110494537
XM_021569681.2 mRNA downstream 74233 74056175 ~ 74066815 (+) False LOC110494542
XM_036950602.1 mRNA downstream 74233 74056175 ~ 74066815 (+) False LOC110494542
XM_036950604.1 mRNA downstream 74233 74056175 ~ 74066815 (+) False LOC110494542
XM_036950605.1 mRNA downstream 74233 74056175 ~ 74066815 (+) True LOC110494542
XM_036950607.1 mRNA downstream 88119 74070061 ~ 74084580 (+) False LOC110494543
TU1699979 other upstream 2219 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 699635 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 856298 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 936066 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1526730 72454563 ~ 72454924 (+) True G1484897
TU1700469 other downstream 406594 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 2701657 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4026348 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4036426 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 4207070 78189012 ~ 78190290 (+) False G1491963

Expression Profile