RNA id: TU1699990



Basic Information


Item Value
RNA id TU1699990
length 794
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1486822
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73986355 ~ 73987148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcttaactgttatgtcattcagccctcgataatctatgcaggggcgcagagacccgtccttcttcttgacaaaaaaaaaccccgctccggcgggagaggaggaggggactatggtaccggcgtcaagagctacagacaaataatcctcgagagccttacgttcgggagccgacagagagtatagtctaccccgggggggagtggttcccggaaggagatcaatactacaatcatacgaccggtgtggaggaagagaggtggccctggaccgactgaacaccgtgcgcagatcgtgatattcctccggcacccctgtcaaatcaccaggctcctcctgtgaagaagagacagaggaaacaggagggatagcagacattaaacatttcacatgacaagagacgttccaggagaggatagaattactagaccaattaatggaaggattatgacaaactagccagggatggcccaaaacaacaggtgtaaaaggtgaacgaaaaatcaaaaaagaaatggtttcgctatgattaccagaaacagtgagggttaaaggtagcgtctcacgctgaatcctggggagaggactaccatccagggcgaacaaggccgtgggctcctttaactgtctgagaggaatgtcatgttcccgagcccaggtctcgtccataaaacagccctccgccccagagtctattaaggcactgcaggaagctgacgaaccggtccagcgtagatggaccgacaaggtagtgcaggatcttgaaggagagacaggagtagtagcgctcaccagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1699986 lncRNA upstream 4413 73981654 ~ 73981942 (+) True G1486818
TU1699983 lncRNA upstream 4737 73981303 ~ 73981618 (+) True G1486815
TU1699982 lncRNA upstream 5087 73980363 ~ 73981268 (+) True G1486814
TU1699980 lncRNA upstream 6456 73979685 ~ 73979899 (+) True G1486812
TU1699967 lncRNA upstream 17905 73968194 ~ 73968450 (+) True G1486799
TU1700052 lncRNA downstream 47171 74034319 ~ 74081450 (+) True G1486869
TU1700118 lncRNA downstream 158304 74145452 ~ 74145667 (+) True G1486928
TU1700128 lncRNA downstream 198389 74185537 ~ 74185740 (+) True G1486938
TU1700320 lncRNA downstream 246812 74233960 ~ 74234247 (+) True G1487100
TU1700371 lncRNA downstream 294919 74282067 ~ 74282292 (+) True G1487149
XM_021569675.2 mRNA upstream 528723 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA upstream 528723 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA upstream 528723 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA upstream 528723 73444750 ~ 73457632 (+) True taf4a
XM_021569674.2 mRNA upstream 569668 73395740 ~ 73416687 (+) True LOC110494537
XM_021569681.2 mRNA downstream 69027 74056175 ~ 74066815 (+) False LOC110494542
XM_036950602.1 mRNA downstream 69027 74056175 ~ 74066815 (+) False LOC110494542
XM_036950604.1 mRNA downstream 69027 74056175 ~ 74066815 (+) False LOC110494542
XM_036950605.1 mRNA downstream 69027 74056175 ~ 74066815 (+) True LOC110494542
XM_036950607.1 mRNA downstream 82913 74070061 ~ 74084580 (+) False LOC110494543
TU1699979 other upstream 6920 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 704336 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 860999 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 940767 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1531431 72454563 ~ 72454924 (+) True G1484897
TU1700469 other downstream 401388 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 2696451 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4021142 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4031220 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 4201864 78189012 ~ 78190290 (+) False G1491963

Expression Profile