RNA id: TU1700660



Basic Information


Item Value
RNA id TU1700660
length 566
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1487411
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74719923 ~ 74720488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtctcctctgaacagttgatgttgagatgtgtctgttacttgaactctttgaagcatttatttgggctgcaatttctgaggctggtaactgtaatgaacttatcctttgcagcagaggtaactctgggtttttctttcctgtggcagtcctcatgaaagcaagtttcatcatagcgcttgatgttttttacgactgtacttgaagaagcTTTCAAATTTCTTAagattttccgtattgactgaccttcatgtcgtaaggtaatgatggactgtcgtttctctttgattatttgagctgttcttgacataatatggacttggtcttttacgaaataggactatcttctgtatgccacccttactttgtcacaacacaactaattggctaaacagcattaaggaaataaattccacaaatgacctTTTAAGAAGGCacgactaactcatgaagctggttgagagaattccaagagtgtgcaaagctgtcatcaaggcaaagggtggctacttagaataatctaaaatctaaaacccttgaatgagtactgtctatatatatatatata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1700655 lncRNA upstream 4282 74713247 ~ 74715641 (+) False G1487407
TU1700656 lncRNA upstream 4282 74713652 ~ 74715641 (+) True G1487407
TU1700640 lncRNA upstream 26781 74692938 ~ 74693142 (+) True G1487394
TU1700626 lncRNA upstream 50435 74669289 ~ 74669488 (+) True G1487380
TU1700625 lncRNA upstream 50903 74668715 ~ 74669020 (+) True G1487379
TU1700661 lncRNA downstream 57 74720545 ~ 74721117 (+) True G1487412
TU1700668 lncRNA downstream 8653 74729141 ~ 74729375 (+) True G1487419
TU1700672 lncRNA downstream 23102 74743590 ~ 74743809 (+) True G1487423
TU1700932 lncRNA downstream 31430 74751918 ~ 74752128 (+) True G1487639
TU1700934 lncRNA downstream 32271 74752759 ~ 74763619 (+) True G1487640
XM_021569737.2 mRNA upstream 38450 74675490 ~ 74681473 (+) True LOC110494562
XM_021569735.2 mRNA upstream 63918 74644178 ~ 74656005 (+) False LOC110494561
XM_021569734.2 mRNA upstream 63918 74644201 ~ 74656005 (+) True LOC110494561
XR_005037080.1 mRNA upstream 65049 74644201 ~ 74654874 (+) False LOC110494561
XM_021569729.2 mRNA upstream 84209 74625995 ~ 74635714 (+) True LOC110494558
XM_021569740.2 mRNA downstream 15733 74736221 ~ 74741481 (+) False adnpa
XM_021569741.2 mRNA downstream 15747 74736235 ~ 74741481 (+) False adnpa
XM_036950648.1 mRNA downstream 15758 74736246 ~ 74741481 (+) True adnpa
XM_021569743.2 mRNA downstream 25699 74746187 ~ 74749119 (+) False LOC110494565
XM_021569744.2 mRNA downstream 25944 74746432 ~ 74749119 (+) True LOC110494565
TU1700469 other upstream 310734 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 740488 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1437904 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1594567 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1674335 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1963111 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3287802 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3297880 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3468524 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3468524 78189012 ~ 78190290 (+) False G1491963

Expression Profile