RNA id: TU1700939


Basic Information

Item Value
RNA id TU1700939
length 223
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1487644
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74772561 ~ 74772783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgtatgtaaacttccgacttcaactgtacataaataCATGTACATTCATGCTGttaaaatacactgagtgtacaaaacattaggaagaccttcctaatattgagttgcaccccttttttgccctcagaacagcctcaattcacccGGGCATGGAATCTACAAAGtttcgaaagcattccacagggatcctggcccatggtgactccaatgcttcccacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1700934 lncRNA upstream 8942 74752759 ~ 74763619 (+) True G1487640
TU1700932 lncRNA upstream 20433 74751918 ~ 74752128 (+) True G1487639
TU1700672 lncRNA upstream 28752 74743590 ~ 74743809 (+) True G1487423
TU1700668 lncRNA upstream 43186 74729141 ~ 74729375 (+) True G1487419
TU1700661 lncRNA upstream 51444 74720545 ~ 74721117 (+) True G1487412
TU1700945 lncRNA downstream 14275 74787058 ~ 74787346 (+) True G1487650
TU1701100 lncRNA downstream 98837 74871620 ~ 74871843 (+) True G1487771
TU1701107 lncRNA downstream 102399 74875182 ~ 74875389 (+) True G1487778
TU1701119 lncRNA downstream 126650 74899433 ~ 74899684 (+) True G1487790
TU1701139 lncRNA downstream 156899 74929682 ~ 74929897 (+) True G1487809
XR_005036708.1 mRNA upstream 2308 74768632 ~ 74770253 (+) True LOC118940106
XM_021569743.2 mRNA upstream 23442 74746187 ~ 74749119 (+) False LOC110494565
XM_021569744.2 mRNA upstream 23442 74746432 ~ 74749119 (+) True LOC110494565
XM_021569740.2 mRNA upstream 31080 74736221 ~ 74741481 (+) False adnpa
NM_001124322.2 mRNA downstream 66765 74839548 ~ 74842075 (+) True opn1sw2
XM_021567517.2 mRNA downstream 81343 74854126 ~ 74858312 (+) True LOC110493256
NM_001124320.1 mRNA downstream 86131 74858914 ~ 74861767 (+) True LOC100135982
XM_021569748.2 mRNA downstream 104410 74877193 ~ 74895463 (+) True gnl3l
XM_036950657.1 mRNA downstream 145481 74918264 ~ 74928441 (+) False LOC110494570
TU1700469 other upstream 363372 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 793126 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1490542 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1647205 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1726973 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1910816 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3235507 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3245585 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3416229 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3416229 78189012 ~ 78190290 (+) False G1491963

Expression Profile