RNA id: TU1701119


Basic Information

Item Value
RNA id TU1701119
length 252
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1487790
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74899433 ~ 74899684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcgctgcaccggtggtggtcatacttgtggatgatgtagacgttgtagagggtctcgctgcaccggtggAGGTCATATTTGTGGATGATGTAGatgtagagggtctcgctgcaccggtggtggtcatacttgtggatgatgtagatgtagagggtctcgctgcaccggtggtggtcatatttgtggatgatgtagacgttgtagagggtctcgctgcaccggtggAGGTCATACTCgtggatgatgtagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701107 lncRNA upstream 24044 74875182 ~ 74875389 (+) True G1487778
TU1701100 lncRNA upstream 27590 74871620 ~ 74871843 (+) True G1487771
TU1700945 lncRNA upstream 112087 74787058 ~ 74787346 (+) True G1487650
TU1700939 lncRNA upstream 126650 74772561 ~ 74772783 (+) True G1487644
TU1700934 lncRNA upstream 135814 74752759 ~ 74763619 (+) True G1487640
TU1701139 lncRNA downstream 29998 74929682 ~ 74929897 (+) True G1487809
TU1701143 lncRNA downstream 45215 74944899 ~ 74945117 (+) True G1487813
TU1701183 lncRNA downstream 107782 75007466 ~ 75012176 (+) True G1487838
TU1701338 lncRNA downstream 139313 75038997 ~ 75039259 (+) True G1487973
TU1701344 lncRNA downstream 143253 75042937 ~ 75043140 (+) True G1487979
XM_021569748.2 mRNA upstream 3970 74877193 ~ 74895463 (+) True gnl3l
NM_001124320.1 mRNA upstream 37666 74858914 ~ 74861767 (+) True LOC100135982
XM_021567517.2 mRNA upstream 41121 74854126 ~ 74858312 (+) True LOC110493256
NM_001124322.2 mRNA upstream 57358 74839548 ~ 74842075 (+) True opn1sw2
XR_005036708.1 mRNA upstream 129180 74768632 ~ 74770253 (+) True LOC118940106
XM_036950657.1 mRNA downstream 18580 74918264 ~ 74928441 (+) False LOC110494570
XM_021569749.2 mRNA downstream 18586 74918270 ~ 74928441 (+) True LOC110494570
XM_021569751.2 mRNA downstream 38084 74937768 ~ 74943605 (+) False cxxc1b
XM_021569752.2 mRNA downstream 38264 74937948 ~ 74942626 (+) True cxxc1b
XM_021569753.2 mRNA downstream 51014 74950698 ~ 74968199 (+) False mbd1b
TU1700469 other upstream 490244 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 919998 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1617414 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1774077 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1853845 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1783915 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3108606 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3118684 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3289328 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3289328 78189012 ~ 78190290 (+) False G1491963

Expression Profile