RNA id: TU1701183


Basic Information

Item Value
RNA id TU1701183
length 1390
lncRNA type read_through
GC content 0.45
exon number 6
gene id G1487838
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75007466 ~ 75012176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaaggaGTAAAACAAGCATATATAGTTTGTTCTGATGGGGAACGACAGCTCATGATGCATcaataagttatattcttcaaaaaaTTAATGGGTATAcatcattcatttaaaagtctAAAAATTGATGTAGGAACTGCAGATTGACGCTTAGGGAGGGGTTAGTCTCATGAAAATGTGAGTGTGCGCTCATGTGTGAGACAAACTGCACAAACTGCAGGTGTGAAACAGTTTTATGGTGAGAGGCAGCATCAAGAAGGAAGAATATCACCACCCTGATTGGAGACAGACGAGCTTCAGATGGAAGTGATCCCCACAGCTATGCAGTATCATGGAAGACTGGCACTACTGTGGCATGATGTCATCGTGGAGCGTGCTCTTGACACTTTGACCCTGACATCACGTCCTCAGGCAGTGCAGAGGAAAGCCGCTGTGGTAGACCCCCAGAGTGTGATCACAGCCATCGACCACTTCTGCAAACAGAGAATGGGCCATGAATATGGGCGAGGAGAAAGGCTCCATTCCGGACTCTGTGGTCAATGAAGTGAGTCCAGTTACTGTCTTGGAGTTAGGCACTTACTGTGGGTACGCAACAGTGTGAATAGCTCGCCTATTACCCCCTGGCGTCAGTGTCATTACCTTGGAGTTCAACCCAGATTATTCTGACACTGCTCGTCAAGTCATCAGATGGTCAGGACTGGAGGAGAAGGTGCAGCAAGTGGAGGGAGCCTCAGGAACTTGGATCCCTCGATTGAAGGAGCATTTCGGGGCCCAGGCGTTTGACTTAGTTTTCCTGGACCACTGGAAAGATCGCTACCTTCCTGACACAAAACTTCTGGAGgagtGTGGTCTCATACAGAaaggcacagtgatgctggcAGACAATGTCATCTGTCCAGGAACCCCTGACTATCTGTAGTACGTCTGCAACAGCTCTCAATACAACAGCCACTACTACAGATCACACCTGGAGTACACTAAAGCAGAGAGCGTCCTGGAGAAGTCTGTGTTCTTAGGGTACTAGCCAAACAGTGAGCCTCTTGCTTTAAAACACTAACTCTCTCTTGATAAAACATTTTGGGTTAGTTTCAATTCAAAGTGCTGCCTTATGACATGCTGTAACTTACTGTGCTAAGCATTTCTTTATCTGTAGAACTGATGTTATCTAGAGTAAGCAAATATGTCTTTGAAAAACTATTTCTACTTGTGTTTTGACATTGTCACAATGCTGTCTTGCTATGCAAATGATGAAAATACCATCAGTTTTATAGCTACAGAATTGCAGTAGTGTGATGTCTTTTTCAAAAATGGATTTAATACACTAGGTGGCAGTGGTGTGCCTTTTTAGATATTCAATCAGACAACTGAAAAGCAGCATGCAGTGGTCCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701143 lncRNA upstream 62349 74944899 ~ 74945117 (+) True G1487813
TU1701139 lncRNA upstream 77569 74929682 ~ 74929897 (+) True G1487809
TU1701119 lncRNA upstream 107782 74899433 ~ 74899684 (+) True G1487790
TU1701107 lncRNA upstream 132077 74875182 ~ 74875389 (+) True G1487778
TU1701100 lncRNA upstream 135623 74871620 ~ 74871843 (+) True G1487771
TU1701338 lncRNA downstream 26821 75038997 ~ 75039259 (+) True G1487973
TU1701344 lncRNA downstream 30761 75042937 ~ 75043140 (+) True G1487979
TU1701377 lncRNA downstream 61594 75073770 ~ 75074016 (+) True G1488009
TU1701391 lncRNA downstream 72695 75084871 ~ 75085268 (+) True G1488022
TU1701392 lncRNA downstream 73288 75085464 ~ 75085762 (+) True G1488023
XM_036950668.1 mRNA upstream 9848 74968357 ~ 74997618 (+) False ccdc120
XM_036950670.1 mRNA upstream 9848 74968357 ~ 74997618 (+) False ccdc120
XM_036950673.1 mRNA upstream 9848 74970058 ~ 74997618 (+) False ccdc120
XM_036950667.1 mRNA upstream 9848 74970059 ~ 74997618 (+) False ccdc120
XM_036950672.1 mRNA upstream 9848 74970059 ~ 74997618 (+) False ccdc120
XM_021569757.2 mRNA downstream 2692 75014868 ~ 75034468 (+) True grm6b
XM_021569765.2 mRNA downstream 31729 75043905 ~ 75050060 (+) False mon1a
XM_021569766.2 mRNA downstream 32869 75045045 ~ 75050060 (+) True mon1a
XM_021569767.2 mRNA downstream 40702 75052878 ~ 75071027 (+) False mst1rb
XM_036950674.1 mRNA downstream 43098 75055274 ~ 75071428 (+) True mst1rb
TU1700469 other upstream 598277 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1028031 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1725447 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1882110 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1961878 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1671423 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2996114 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3006192 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3176836 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3176836 78189012 ~ 78190290 (+) False G1491963

Expression Profile