RNA id: TU1701338


Basic Information

Item Value
RNA id TU1701338
length 263
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1487973
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75038997 ~ 75039259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gGAAaactaaaatattacatttacataagtattcagaccctttactcagtactttgttgaagcacctttgacagcgattacagcctcgagtcttcttgggtattacactacaggcttggcacacctgtatttggggagttcctcccattcttctccgaagctcctctcaagcgctgtcaggttggatggggagagtcgctgcacagctatttacaggtctctccagagatgttcgatcaggttcaagtctgggctctggctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701183 lncRNA upstream 26821 75007466 ~ 75012176 (+) True G1487838
TU1701143 lncRNA upstream 93880 74944899 ~ 74945117 (+) True G1487813
TU1701139 lncRNA upstream 109100 74929682 ~ 74929897 (+) True G1487809
TU1701119 lncRNA upstream 139313 74899433 ~ 74899684 (+) True G1487790
TU1701107 lncRNA upstream 163608 74875182 ~ 74875389 (+) True G1487778
TU1701344 lncRNA downstream 3678 75042937 ~ 75043140 (+) True G1487979
TU1701377 lncRNA downstream 34511 75073770 ~ 75074016 (+) True G1488009
TU1701391 lncRNA downstream 45612 75084871 ~ 75085268 (+) True G1488022
TU1701392 lncRNA downstream 46205 75085464 ~ 75085762 (+) True G1488023
TU1701399 lncRNA downstream 53630 75092889 ~ 75093293 (+) True G1488028
XM_021569757.2 mRNA upstream 4529 75014868 ~ 75034468 (+) True grm6b
XM_036950663.1 mRNA upstream 24684 75000076 ~ 75014313 (+) False LOC110494575
XM_036950660.1 mRNA upstream 24684 75000077 ~ 75014313 (+) False LOC110494575
XM_036950661.1 mRNA upstream 24684 75000077 ~ 75014313 (+) False LOC110494575
XM_036950662.1 mRNA upstream 24684 75000077 ~ 75014313 (+) False LOC110494575
XM_021569765.2 mRNA downstream 4646 75043905 ~ 75050060 (+) False mon1a
XM_021569766.2 mRNA downstream 5786 75045045 ~ 75050060 (+) True mon1a
XM_021569767.2 mRNA downstream 13619 75052878 ~ 75071027 (+) False mst1rb
XM_036950674.1 mRNA downstream 16015 75055274 ~ 75071428 (+) True mst1rb
XM_036950676.1 mRNA downstream 139747 75179006 ~ 75259755 (+) True LOC110494580
TU1700469 other upstream 629808 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1059562 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1756978 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1913641 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1993409 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1644340 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2969031 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2979109 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3149753 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3149753 78189012 ~ 78190290 (+) False G1491963

Expression Profile