RNA id: TU1701399



Basic Information


Item Value
RNA id TU1701399
length 381
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1488028
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75092889 ~ 75093293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggaatttttatcaatgatgactaattatgtatacatttcaatcaggactgactagtccaaatgttattatgtactgtacatgtatgaattttctctcttgctcccattcccaattgtatataatatagtCAGGAGTTTAGAACAGTGccttggtacaaatgaatgaactatctccagactgtctagaatgctatctacactgactgaccttggcttcaggcgaggagggaaggctcgAGAACTTTAGGGCCTCTCTACCGGTGTCATGAAgagatagaacatttagaaaacgctgacgtcattttcagtttataacctgtggaaaaatgtgtatgtaccgcagtactctcttgaattaaacgctgttacctgacttttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1701392 lncRNA upstream 7127 75085464 ~ 75085762 (+) True G1488023
TU1701391 lncRNA upstream 7621 75084871 ~ 75085268 (+) True G1488022
TU1701377 lncRNA upstream 18873 75073770 ~ 75074016 (+) True G1488009
TU1701344 lncRNA upstream 49749 75042937 ~ 75043140 (+) True G1487979
TU1701338 lncRNA upstream 53630 75038997 ~ 75039259 (+) True G1487973
TU1701649 lncRNA downstream 185325 75278618 ~ 75284031 (+) True G1488273
TU1701682 lncRNA downstream 224526 75317819 ~ 75323092 (+) True G1488304
TU1701683 lncRNA downstream 224684 75317977 ~ 75322996 (+) False G1488305
TU1701684 lncRNA downstream 224684 75317977 ~ 75322996 (+) True G1488305
TU1701707 lncRNA downstream 257425 75350718 ~ 75352160 (+) False G1488325
XM_036950674.1 mRNA upstream 21461 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 21862 75052878 ~ 75071027 (+) False mst1rb
XM_021569765.2 mRNA upstream 42829 75043905 ~ 75050060 (+) False mon1a
XM_021569766.2 mRNA upstream 42829 75045045 ~ 75050060 (+) True mon1a
XM_021569757.2 mRNA upstream 58421 75014868 ~ 75034468 (+) True grm6b
XM_036950676.1 mRNA downstream 85713 75179006 ~ 75259755 (+) True LOC110494580
XM_021569796.2 mRNA downstream 798314 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 912890 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 912892 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 946719 76040012 ~ 76046166 (+) True mitfa
TU1700469 other upstream 683700 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1113454 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 1810870 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 1967533 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2047301 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1590306 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2914997 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2925075 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 3095719 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 3095719 78189012 ~ 78190290 (+) False G1491963

Expression Profile