RNA id: TU1701683



Basic Information


Item Value
RNA id TU1701683
length 369
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1488305
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75317977 ~ 75322996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgttacggtgcgtgaatgaggacccaaaagcgaattaacgtaaacagagcttctttaatgacaaaacataggtaggctcagatggaccggcagattccgacaggacaggacaaggttgcagcaaacatgacgatagtctggttcaggcatgaataacacaaacaagaatccgacaaagacaggaacaaaaacagagagagatatagaggactaatcagagggaaaaagggaacaggtgggaaaaggggtgacgaggtagttaggaggagacaaggaacagctgggggaaagagggggagaaaaggtaacctaataatgaccagcagagggagacagggtgaagggaaaggacagaaacaagacacaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1701649 lncRNA upstream 33946 75278618 ~ 75284031 (+) True G1488273
TU1701399 lncRNA upstream 224684 75092889 ~ 75093293 (+) True G1488028
TU1701392 lncRNA upstream 232215 75085464 ~ 75085762 (+) True G1488023
TU1701391 lncRNA upstream 232709 75084871 ~ 75085268 (+) True G1488022
TU1701377 lncRNA upstream 243961 75073770 ~ 75074016 (+) True G1488009
TU1701707 lncRNA downstream 27722 75350718 ~ 75352160 (+) False G1488325
TU1701705 lncRNA downstream 27763 75350759 ~ 75352160 (+) True G1488325
TU1701850 lncRNA downstream 92396 75415392 ~ 75415667 (+) True G1488462
TU1701858 lncRNA downstream 97357 75420353 ~ 75420694 (+) True G1488470
TU1701890 lncRNA downstream 139873 75462869 ~ 75463085 (+) True G1488501
XM_036950676.1 mRNA upstream 58222 75179006 ~ 75259755 (+) True LOC110494580
XM_036950674.1 mRNA upstream 246549 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 246950 75052878 ~ 75071027 (+) False mst1rb
XM_021569765.2 mRNA upstream 267917 75043905 ~ 75050060 (+) False mon1a
XM_021569796.2 mRNA downstream 568611 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 683187 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 683189 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 717016 76040012 ~ 76046166 (+) True mitfa
XR_005037081.1 mRNA downstream 750067 76073063 ~ 76088669 (+) False zgc:113054
TU1700469 other upstream 908788 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1338542 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 2035958 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2192621 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2272389 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1360603 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2685294 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2695372 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2866016 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2866016 78189012 ~ 78190290 (+) False G1491963

Expression Profile