RNA id: TU1701707


Basic Information

Item Value
RNA id TU1701707
length 1269
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1488325
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75350718 ~ 75352160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTAATCCCTCTGTACTATTATTCTTGCTGACAGGTAAATCTTATCTTCCACAGGGGCAGCGCCACGTCCAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAGAGAGTTCTGTACAATGGGACAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAGAGCGTTGTGTACAATGGGACAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAGAGAGTTCTGTACAATGGGACAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAAAGAGTTCTGTACAATGGGACAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAGAGAGTTGTGTACAATGGGACAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAGAGAGTTGTGTACAATGGGACAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAGAGCGTTGTGTACAATGGGACAAGAATACACCGTGGTTTGGATCTCAATCTGAGAACAGAGCGTTGTGTACAATGGGACAAGGCCATACAGGATTTCTAGACCTGTTTATCCAGTGAGCACTAATGCTCTGTTTTCACTGGTGAGGAAAGCCACCAAATCCCACAGGAAGTGCCACTTATGCCACCTAGAAAAGAGTGACCTTCAAGGGTGAAACCCTGTGGGTCTGTTAGACAGTTTAGTCTCACTGCTTCAGTTTAACCCAACCAGCTGGTGCTGAAAGAAAGGTAGTTTCTGGAAACAATCAATTATCTATCAATGTCTGTATTGTATTTTTGGTGAGAATAAAATCACTTGCTCTCTACACAAGTCTGTCTACATACAACCCATCTCTGAGTACTGTAGACTGACTTAGCTAGCAGACTGCTTGGATTTCAGCTCTGAGAAAACTGAATCCACTGAAGAAAACCATAGCAACCATTTTGATTAAAGGAAACAATGAGGTAGAGTCTTAATAGCATTCATTTGGAACATGTGCCATCATTTACCCTTCAAAAGTCTGCGTATGTTCTCTGTAAGAGGCTCAGTGTAATCTCACAATATCAAAGGCTAACACTgtttctgctaaccatgtgtatgtgacaaataaatttgatttgatttgatttgatttgatttgctaacACTGTTTCTGCTCTGCTTTTACTTGATGGTCTGGTTCTGTTTTTCTGTTATTCTAGTTGAATAAAGAGTGAAACTGTGTGAGTGcgtattttaaaataaaaacaaaggTGTACAGGCCCCACTGGTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701682 lncRNA upstream 27626 75317819 ~ 75323092 (+) True G1488304
TU1701683 lncRNA upstream 27722 75317977 ~ 75322996 (+) False G1488305
TU1701684 lncRNA upstream 27722 75317977 ~ 75322996 (+) True G1488305
TU1701649 lncRNA upstream 66687 75278618 ~ 75284031 (+) True G1488273
TU1701399 lncRNA upstream 257425 75092889 ~ 75093293 (+) True G1488028
TU1701850 lncRNA downstream 63232 75415392 ~ 75415667 (+) True G1488462
TU1701858 lncRNA downstream 68193 75420353 ~ 75420694 (+) True G1488470
TU1701890 lncRNA downstream 110709 75462869 ~ 75463085 (+) True G1488501
TU1701891 lncRNA downstream 113313 75465473 ~ 75465888 (+) True G1488502
TU1701904 lncRNA downstream 130033 75482193 ~ 75482396 (+) True G1488515
XM_036950676.1 mRNA upstream 90963 75179006 ~ 75259755 (+) True LOC110494580
XM_036950674.1 mRNA upstream 279290 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 279691 75052878 ~ 75071027 (+) False mst1rb
XM_021569765.2 mRNA upstream 300658 75043905 ~ 75050060 (+) False mon1a
XM_021569796.2 mRNA downstream 539447 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 654023 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 654025 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 687852 76040012 ~ 76046166 (+) True mitfa
XR_005037081.1 mRNA downstream 720903 76073063 ~ 76088669 (+) False zgc:113054
TU1700469 other upstream 941529 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1371283 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 2068699 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2225362 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2305130 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1331439 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2656130 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2666208 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2836852 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2836852 78189012 ~ 78190290 (+) False G1491963

Expression Profile