RNA id: TU1701984


Basic Information

Item Value
RNA id TU1701984
length 3394
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1488591
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75516451 ~ 75519874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTTATGGTGCGGCAGCCATTAATGAGATGTTAAACAGATAGCCTATTTCACTATTCAGGTTGACCAGCATTTGCAATGAATTAACTATGTGTGCTGTAAGGTCCCGCTGCCTATGCAACTACAAGTAGCCTTTAGCAGCCTATAatgtaaacaaatatatatagaaTACATTAATATAGCTAGATCCATCCCACTTGTTATGCACATTTGTTCAGTTTGGTGATGGAAGATAGGCTATGCTTTATGCCAGTATGAGATTATTGCTGTGTCTTACATTGTTATTCTTTAACAGTCAACTGTACTGCAATGAAAATACAGTTAATGCATTAACGGTGGGACAGGTAAACAGATATGATAAACTGGTAGCCTATTGCACTATTCAGATTGACCAGCATTAGCAATGGGAACTGCAATTCGACTTCAACAAGTATAGCAGCCTATAATGTCTCCATATCACTTGTTATGCACATTGTCCAGATCTTGTCCAGTTTGGTGCTGGAAGATTATGCTTCTGCTACCTATCTTTTTGCTTTAGGAATAGGCCCACATGCTGTATGAAAAAAAGGCTATAGGCCTAAAACAGGCAGGCCTATATTGGTTCTGTTGGTTAGTTCTTATTTTCTGATGAATAGGCATATGCCTATATAAAACGTTTTCACATAACTTTTCCTCTAACTGATAAAACTTACAATCACTCAAAATATTATTGAATATATGCTTGACTAGGCTATCCTTTATATGATGAAGACTAATCCATTTTTTTCTATCAATCAATCCACTAGTTCCAAAAATGTCAGGTAGTCATACTACAATATCCTATTAGTCTGTTATAGAATCCCTATCAAGTTGTGTCGTGTGGAACATGATATTGTAAATATATAGTTACCTACAGCAACCTGCTTAAATCCAAGTCTTCTTTTTTTTCATGTCTTCTTGATTTAGGTCTACAATGGCAAATGCCATATATGCTGGTCCATTTTTATCCTAGTGGGCCTGTCTaacttttattgttttgttgttgcacAAAATTATAATTATCTATCTAATAATGGGGGCCTCAAGGAAAAAAATGGGCCGTTGTGTCAGAAATGCCAGAGACGATTTCTAGTCCCAGTCTGCCCCTGACTGCTGCTTTATGGATTATGTGAGTGTTAATGTTATGTAAGCATGTGATGTTATGATGAGAAGCAAGGTTGGGTTGCATTGCTGTGCAACATGCTAGGGTTCTACCAAGATTCAGACCCGAACTCTTATTTCCACCGAAAAAAAACTTTATGTAAACAATACTTTATAGACAAAATATGTACAACAAGCAACCTTCTGTTATGTCCCAAAATGAAAATCCCAAGTACCTTATCCTATACAAAACTAACATTTTGCTGTAGCATTACATTCATTCTCCTCTCTTTGACACAGCCTCAATAATTGATACAAATACATTTAGGCATCTGCCATAATTTGTCTGCTTTAAGCAAAATCAAGCATGAACTACGAACAGGCCAGAAATTGACCAGACCCGAAATGAATAATGAGCATGATGCAAATCAGGTTTAGCACAATGCTATGTACATGTTCTCTTGGCAAACAGCAAAATGGCCATCTAAAATTCCCTCCCTCTAGTTACAATGCAAATACACTCTATAGGTCATGTATCAAAAATAGAGATGTACAAGTAGTATAAACAAAATAATTACAAGACATTACCTCACAAGAACTACTTGCACGAATGGTAGCGACTTACAAACTCAAAACTAAAATGCATAACTGAATGCATCACTCCTCTATTTACATGAGTGACACATATCAGGTCCGGTGACACCATCCTGACTTTTTCTAAAGAATAAAATCCAGTGGAGTCCATTTAGCTGCAATGTAGCGTACACTTGGTGGGTGAAGAGGGAGCAATGGATTTTGTGACAACCCTGGTCAACATAAACCAGAGACGTATTTGGTAGCGTTCTGGTCTAAAGGCGGGTCCGTTGCAGTTTCAGCAGTTACAGATGCAGAAAATGTGGATCCTCCGGTCGCACGTCTAAAACACATAGAACCTCAAGCAGCATCTACAGGGGTTTTGTTAAATTCTTACAATCAATACAGACCGGTGTGTGTGCAAAGGGCAGGTCTGAATGGCTGGGGGCTGTGCTGTCTGCTCATCTCCATGTTTAACTCGGACATTCAACACAAGTGCAGGGAAGCCATCCCCACAGTAAGTCCTTCTCTTAACCACTTTTATCATGTCCTTGTGTTGACCAGCTCTTCACAGTGACTCAGAGCTTTGCAACAGGTCATCTGTGATCCTCCATAGGGTCAGAGCTTCAGTGCTAACTGGCTCCAAGGTTGATCTGTGGGCTGGTTTGGAGGGTTGTGGCCACTGGGTTTGTGCGTGACAGTTGTTGTTTGCTCTCAAAGGGAGAGTGTGggctgctgttgctgagggagACAAACTGGTGCTCTCGTGTTTGTCCTTGCTAACCTGGACGCCTTCCAGCAGGCGATCCGTTCAACCCCAAACATTCATAGAGCAGGGTGCAAACACAAAAGTGTATCAGTCTTTGGATTCCAAGTTCATGGGGGGGCTTGTTTTAAAGCTTGAAGGAGGGCTGGTGAGTCCATGGGTGCTTGGTAGAGTGTCGGGGAACCTGCCCTGGGAGACATTACTAAGTTTTTAGGTATTTTCTCTGGAGACAAGCTGGCTGCTGAGACATTCATGCCCGGGTACAAAAAGGGCATGCCCCCTGGGAACCAGCACTTCTCCATCATGGGCCACGATGCAGCTGCTTGGGGGATGAGGTAGAAGGGCACGCAGAGGGGGGTCTGGTGTTGGGAGAAGCTCATGTAGCTGTGATGGCTGCTAACCACCTGCCCAGAGGAAGACTCGTCCTCTGAGTAGTCAGATTTTAACCTCTTGGCCTGGGGCTCAGCACCCTCCTGCTTGACGCCACCTCCTGCCATCCTCTCAGCCAGAGCATATTTGAGCTCCCCCTCCTTGCTGTAGTAGCTTGAGCGTTGGGCTTTGAGGTCCCGTTTCTCGTGTTCCCCTCCATAGCCGCTGTCAGTGTCTGTGTCATTGCCACTCTGCTCTCCATGTCCGTGGGGGTATGTCCTTTGAATGACAGACACAAAGTTCTTGGGGTGACCCTCCTTGCCCTTAGGCATCTGACCAGTAGGCTTCTCCATGCTATCGATGGGTTTGTGGGTGGGTTCTTCGGACTGGGGGCTGAATGGACCCTGGAGCACCTCTGATGCTACTTTGTGGAGGTGGCTGATCATTTCAGAGGAGGTCAGGGGGTCTCTGCTGCTCCCCTGGTTAGCCAGGTACTGGAGGACCTCCTTAGCACAGACATGGAAGCCAGAGTGGAACATCTCCTCACTGTTCTCTGAGCTAACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1701981 lncRNA upstream 385 75515835 ~ 75516066 (+) True G1488590
TU1701911 lncRNA upstream 22660 75493563 ~ 75493791 (+) True G1488522
TU1701907 lncRNA upstream 25712 75490213 ~ 75490739 (+) True G1488518
TU1701904 lncRNA upstream 34055 75482193 ~ 75482396 (+) True G1488515
TU1701891 lncRNA upstream 50563 75465473 ~ 75465888 (+) True G1488502
TU1701990 lncRNA downstream 3934 75523808 ~ 75524083 (+) True G1488596
TU1701992 lncRNA downstream 7440 75527314 ~ 75527775 (+) True G1488598
TU1701994 lncRNA downstream 8711 75528585 ~ 75589445 (+) True G1488600
TU1702093 lncRNA downstream 157818 75677692 ~ 75677918 (+) True G1488696
TU1702094 lncRNA downstream 158081 75677955 ~ 75678223 (+) True G1488697
XM_036950676.1 mRNA upstream 256696 75179006 ~ 75259755 (+) True LOC110494580
XM_036950674.1 mRNA upstream 445023 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 445424 75052878 ~ 75071027 (+) False mst1rb
XM_021569765.2 mRNA upstream 466391 75043905 ~ 75050060 (+) False mon1a
XM_021569796.2 mRNA downstream 371733 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 486309 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 486311 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 520138 76040012 ~ 76046166 (+) True mitfa
XR_005037081.1 mRNA downstream 553189 76073063 ~ 76088669 (+) False zgc:113054
TU1700469 other upstream 1107262 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1537016 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 2234432 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2391095 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2470863 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1163725 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2488416 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2498494 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2669138 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2669138 78189012 ~ 78190290 (+) False G1491963

Expression Profile