RNA id: TU1702098


Basic Information

Item Value
RNA id TU1702098
length 216
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1488701
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75680089 ~ 75680304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGGGTGTTCTCAAGTTGCTACACTGCAGGGTGTTCTCGAGTTGCTACGCTGCATAATGAAAATGTATTATTCATCACAAAAATACGTAAGTTGGTCACACTTAGTCCACCTATTACCTTTCCCCTGGAAGTATTTCTCCTTTGAGCACCAATAATCAAAGAAGTGCAATTGCAGTGTTGTTTAAGTGctaatgcccgagaagccagtgtttgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1702097 lncRNA upstream 385 75679285 ~ 75679704 (+) True G1488700
TU1702096 lncRNA upstream 885 75678978 ~ 75679204 (+) True G1488699
TU1702094 lncRNA upstream 1866 75677955 ~ 75678223 (+) True G1488697
TU1702093 lncRNA upstream 2171 75677692 ~ 75677918 (+) True G1488696
TU1701994 lncRNA upstream 90644 75528585 ~ 75589445 (+) True G1488600
TU1702099 lncRNA downstream 743 75681047 ~ 75681286 (+) True G1488702
TU1702100 lncRNA downstream 1105 75681409 ~ 75681734 (+) True G1488703
TU1702061 lncRNA downstream 5933 75686237 ~ 75686452 (+) True G1488664
TU1702103 lncRNA downstream 14867 75695171 ~ 75695374 (+) True G1488706
TU1702227 lncRNA downstream 18064 75698368 ~ 75698642 (+) True G1488807
XM_036950676.1 mRNA upstream 420334 75179006 ~ 75259755 (+) True LOC110494580
XM_036950674.1 mRNA upstream 608661 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 609062 75052878 ~ 75071027 (+) False mst1rb
XM_021569765.2 mRNA upstream 630029 75043905 ~ 75050060 (+) False mon1a
XM_021569796.2 mRNA downstream 211303 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 325879 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 325881 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 359708 76040012 ~ 76046166 (+) True mitfa
XR_005037081.1 mRNA downstream 392759 76073063 ~ 76088669 (+) False zgc:113054
TU1700469 other upstream 1270900 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1700654 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 2398070 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2554733 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2634501 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 1003295 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2327986 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2338064 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2508708 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2508708 78189012 ~ 78190290 (+) False G1491963

Expression Profile