RNA id: TU1702463


Basic Information

Item Value
RNA id TU1702463
length 235
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1489032
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 75873205 ~ 75873439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcaattatatttcaaccggacaaaagctttgtcaataggaaaggagaaacaagaaaggcgcgttCCCGAATAGGCGCATGGCTGAtgaatggaaatttccactggccactgattgaaagtgctgtatctccctcatttttcagagtaaaagcctgaaacaatgcctaaagactggccacaaTGCCTAAAGAAAGCCACAGAGCTCATGAACTGgctcctaagtctttgtatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1702457 lncRNA upstream 11462 75861425 ~ 75861743 (+) True G1489026
TU1702417 lncRNA upstream 32402 75840426 ~ 75840803 (+) True G1488986
TU1702412 lncRNA upstream 38064 75834656 ~ 75835141 (+) True G1488981
TU1702410 lncRNA upstream 38665 75834275 ~ 75834540 (+) True G1488979
TU1702337 lncRNA upstream 77440 75788220 ~ 75795765 (+) True G1488906
TU1702522 lncRNA downstream 74898 75948337 ~ 75988795 (+) True G1489073
TU1702563 lncRNA downstream 130530 76003969 ~ 76011751 (+) True G1489114
TU1702570 lncRNA downstream 137853 76011292 ~ 76030817 (+) True G1489120
TU1702865 lncRNA downstream 268985 76142424 ~ 76143081 (+) True G1489388
TU1702866 lncRNA downstream 269700 76143139 ~ 76143457 (+) True G1489389
XM_036950676.1 mRNA upstream 613450 75179006 ~ 75259755 (+) True LOC110494580
XM_036950674.1 mRNA upstream 801777 75055274 ~ 75071428 (+) True mst1rb
XM_021569767.2 mRNA upstream 802178 75052878 ~ 75071027 (+) False mst1rb
XM_021569765.2 mRNA upstream 823145 75043905 ~ 75050060 (+) False mon1a
XM_021569796.2 mRNA downstream 18168 75891607 ~ 75895493 (+) True arl6ip5a
XM_036950685.1 mRNA downstream 132744 76006183 ~ 76046166 (+) False mitfa
XM_036950686.1 mRNA downstream 132746 76006185 ~ 76046166 (+) False mitfa
XM_036950687.1 mRNA downstream 166573 76040012 ~ 76046166 (+) True mitfa
XR_005037081.1 mRNA downstream 199624 76073063 ~ 76088669 (+) False zgc:113054
TU1700469 other upstream 1464016 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 1893770 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 2591186 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 2747849 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 2827617 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 810160 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 2134851 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 2144929 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 2315573 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 2315573 78189012 ~ 78190290 (+) False G1491963

Expression Profile