RNA id: TU1702982



Basic Information


Item Value
RNA id TU1702982
length 213
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1489496
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76291130 ~ 76291342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACCTCTGACCTGAtgattttaacctttctgatctaaATGCCAGTTAGTCTGACCACTAGTCTGCTCTACTGACCAGGACACAGGCCTCAGCAGCCCTGGCCCTGATACAATGtactgtactgggctgtactgggcCTGGTTGTCTACTCTACAGTACAGGGTTGGCAACGTGGGAGAAAGTCACGTGAGTCTTCTTATCACTTAGCAAGTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1702955 lncRNA upstream 31664 76259111 ~ 76259466 (+) True G1489469
TU1702866 lncRNA upstream 147673 76143139 ~ 76143457 (+) True G1489389
TU1702865 lncRNA upstream 148049 76142424 ~ 76143081 (+) True G1489388
TU1702570 lncRNA upstream 260313 76011292 ~ 76030817 (+) True G1489120
TU1702563 lncRNA upstream 279379 76003969 ~ 76011751 (+) True G1489114
TU1703364 lncRNA downstream 203900 76495242 ~ 76495466 (+) True G1489839
TU1703367 lncRNA downstream 208593 76499935 ~ 76500161 (+) True G1489842
TU1703376 lncRNA downstream 213950 76505292 ~ 76505502 (+) True G1489850
TU1703382 lncRNA downstream 220397 76511739 ~ 76512013 (+) True G1489855
TU1703386 lncRNA downstream 222077 76513419 ~ 76513645 (+) True G1489859
XR_005037081.1 mRNA upstream 202461 76073063 ~ 76088669 (+) False zgc:113054
XM_021569801.2 mRNA upstream 202461 76073064 ~ 76088669 (+) True zgc:113054
XM_036950685.1 mRNA upstream 244964 76006183 ~ 76046166 (+) False mitfa
XM_021569809.2 mRNA downstream 168116 76459458 ~ 76463496 (+) True LOC110494598
XM_021569813.2 mRNA downstream 349005 76640347 ~ 76657067 (+) False gxylt2
XM_021569812.2 mRNA downstream 349009 76640351 ~ 76657067 (+) False gxylt2
XM_021569814.2 mRNA downstream 349016 76640358 ~ 76657067 (+) False gxylt2
XM_021569815.2 mRNA downstream 372102 76663444 ~ 76673208 (+) False LOC110494602
TU1700469 other upstream 1881941 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2311695 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3009111 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3165774 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 3245542 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 392257 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 1716948 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1727026 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1897670 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1897670 78189012 ~ 78190290 (+) False G1491963

Expression Profile