RNA id: TU1703386



Basic Information


Item Value
RNA id TU1703386
length 227
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1489859
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 76513419 ~ 76513645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgttacatctagtctatgagaccaggctgtattCTTAATACCTAGAATATGTACCCATTTCTTCTAAAAATGTACCCATTTTAGAAGAAATGGGTACATATTGACATATTGAGGAACATATTGAGGAATTGGCAGTTGAAAGAATACATACCCAATCAAGACCCGGTTTCCGAATAGCGATGGAATTTAGGCTTATGAGTGTTTTAAAGATGCATCTTTCCTACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1703382 lncRNA upstream 1406 76511739 ~ 76512013 (+) True G1489855
TU1703376 lncRNA upstream 7917 76505292 ~ 76505502 (+) True G1489850
TU1703367 lncRNA upstream 13258 76499935 ~ 76500161 (+) True G1489842
TU1703364 lncRNA upstream 17953 76495242 ~ 76495466 (+) True G1489839
TU1702982 lncRNA upstream 222077 76291130 ~ 76291342 (+) True G1489496
TU1703387 lncRNA downstream 169 76513814 ~ 76514059 (+) True G1489860
TU1703390 lncRNA downstream 5709 76519354 ~ 76519594 (+) True G1489863
TU1703395 lncRNA downstream 9772 76523417 ~ 76523654 (+) True G1489868
TU1703402 lncRNA downstream 20952 76534597 ~ 76535049 (+) True G1489875
TU1703429 lncRNA downstream 59219 76572864 ~ 76573417 (+) True G1489902
XM_021569809.2 mRNA upstream 49923 76459458 ~ 76463496 (+) True LOC110494598
XR_005037081.1 mRNA upstream 424750 76073063 ~ 76088669 (+) False zgc:113054
XM_021569801.2 mRNA upstream 424750 76073064 ~ 76088669 (+) True zgc:113054
XM_036950686.1 mRNA upstream 467253 76006185 ~ 76046166 (+) False mitfa
XM_021569813.2 mRNA downstream 126702 76640347 ~ 76657067 (+) False gxylt2
XM_021569812.2 mRNA downstream 126706 76640351 ~ 76657067 (+) False gxylt2
XM_021569814.2 mRNA downstream 126713 76640358 ~ 76657067 (+) False gxylt2
XM_021569815.2 mRNA downstream 149799 76663444 ~ 76673208 (+) False LOC110494602
XM_021569816.2 mRNA downstream 149799 76663444 ~ 76673208 (+) True LOC110494602
TU1700469 other upstream 2104230 74388536 ~ 74409189 (+) False LOC110493252
TU1699979 other upstream 2533984 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 3231400 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 3388063 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 3467831 73044737 ~ 73045588 (+) True LOC110494525
TU1703557 other downstream 169954 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 1494645 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 1504723 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 1675367 78189012 ~ 78190290 (+) False G1491963
TU1705669 other downstream 1675367 78189012 ~ 78190290 (+) False G1491963

Expression Profile